TABLE 1.
Isolate no. | emm type | hasA | hasB |
---|---|---|---|
SPY111 | 22 | S109N, D402V | |
SPY138 | 22 | S109N | |
SPY173 | 22 | S109N; c394t = stop at aa 132 | |
SPY205 | 22 | S109N | |
SPY127 | 44 | ||
SPY132 | 44 | ||
SPY380 | 44 | ||
SPY315 | 78 | ||
SPY163 | 81 | g224t = stop at aa 82 | |
SPY228 | 87 | 1 bp insert = stop at aa 47 | |
SPY212 | 89 | Absent | Absent |
SPY374 | 90 | ||
SPY276 | 92 | ||
SPY320 | 92 | ||
SPY116 | 102 | I41V | I235V, R305Q, N400G |
SPY122 | 102 | I41V | I235V, R305Q, N400G |
SPY233 | 102 | I41V | I235V, R305Q, N400G |
SPY326 | 102 | I41V | I235V, R305Q, N400G |
SPY121 | 113 | Y52S; 1 bp delete = stop at aa 105 | |
SPY365 | 113 | Y232D | Y52S |
aa, amino acid. Reference sequences (NCBI accession no.): emm22: NZ_CP035438.1, NZ_CAAIOC010000006.1, NZ_CAAJES010000006.1, NZ_CAAIJZ010000003.1; emm44: NZ_CAAIYK010000002.1, NZ_CAAIXB010000002.1; emm78: CP035437.1, NZ_CAAJDX010000002.1; emm81: CP027771.1, NZ_CAAJCN010000008.1; emm87: NZ_CAAIZD010000010.1, NZ_CAAIUZ010000009.1; emm90: CP035444.1, NZ_CAAJFV010000002.1; emm102: NZ_CAAIOC010000006.1, NZ_CAAHKE010000006.1, NZ_CAAJES010000006.1; emm113: NZ_CAAIYN010000002.1, NZ_CAAIXY010000002.1, NZ_CAAIXF010000003.1, CAAHKQ010000017.1.