TABLE 2.
Features of the genomes and plasmids identified in two MDR C. sakazakii isolates
| Strain | Location | Size (bp) | G+C content (%) | No. of ORFs | No. of RNAs | ST or Inc type | Virulence genes | AMR genes | AMR spectrum |
|---|---|---|---|---|---|---|---|---|---|
| Crono-589 | Chromosome | 4,299,463 | 56.9 | 3,940 | 109 | 40 | cusC, fkpA, flhA, hfq, hha, higB, higB1, higB2, hlyIII, nanA, nanK, nanT, ompA, ompX, vgrG1, zpx | blaCSA-1, CRP, EF-Tu, emrB, GlpT, H-NS, msbA | AMP-TET-SXT-CHL |
| Plasmid pCrono589-1 | 158,317 | 56.6 | 148 | IncFIB | cpa, iucA, iucB, iucC, iucD | aadA2, blaTEM-1, catII, dfrA12, LAP-2, mphA, qnrS1, sul1, tet(A) | |||
| Plasmid pCrono589-2 | 34,303 | 47.4 | 44 | IncFIB | |||||
| Crono-684 | Chromosome | 4,364,183 | 56.9 | 3,974 | 106 | 4 | cusC, fkpA, flhA, hfq, hha, higB, higB2, hlyIII, nanA, nanK, nanT, ompA, ompX, vgrG1, zpx | blaCSA-2, CRP, EF-Tu, emrB, GlpT, H-NS, msbA | AMP-TET-SXT-CHL |
| Plasmid pCrono684-1 | 118,144 | 57.2 | 111 | IncFIB | cpa, iucA, iucB, iucC, iucD | ||||
| Plasmid pCrono684-2 | 94,206 | 49.6 | 121 | IncY | blaTEM-135, dfrA14, floR, qnrS1, tet(A) | ||||