TABLE 1.
DEGs directly downregulated/repressed by PhoP
| Gene | Log2 fold change | P value | Annotation |
|---|---|---|---|
| KYF39_00905 | 3.12 | 1.39E−15 | ABC transporter ATP-binding protein |
| KYF39_00915 | 2.14 | 2.00E−89 | IS1595-like element ISRan1 family |
| KYF39_01795 | 1.65 | 6.17E−04 | Hypothetical protein |
| KYF39_04355 | 1.53 | 9.70E−03 | tRNA-Glu |
| KYF39_04370 | 1.61 | 5.32E−32 | N-Acetylmuramoyl-l-alanine amidase |
| KYF39_04375 | 1.84 | 1.27E−18 | LPS assembly protein LptD |
| KYF39_04380 | 1.72 | 2.97E−37 | RidA family protein |
| KYF39_04385 | 1.48 | 3.26E−12 | Hypothetical protein |
| KYF39_04395 | 1.67 | 2.29E−28 | Citrate synthase |
| KYF39_04400 | 1.16 | 8.51E−12 | AhpC/TSA family protein |
| KYF39_04435 | 1.01 | 3.72E−07 | Type B 50S ribosomal protein L36 |
| KYF39_04790 | 1.25 | 2.90E−07 | Do family serine endopeptidase |
| KYF39_04905 | 1.50 | 1.47E−02 | Hypothetical protein |
| KYF39_05510 | 1.78 | 1.12E−08 | Adenosine deaminase |
| KYF39_05530 | 1.11 | 2.81E−16 | Hypothetical protein |
| KYF39_05545 | 1.01 | 2.53E−05 | IS982-like element ISRa1 family transposase |
| KYF39_05775 | 1.09 | 1.18E−08 | HAMP domain-containing histidine kinase |
| KYF39_05845 | 1.84 | 5.22E−04 | ABC transporter ATP-binding protein/permease |
| KYF39_06240 | 1.29 | 3.06E−05 | Hypothetical protein |
| KYF39_06250 | 1.77 | 1.46E−11 | Hypothetical protein |
| KYF39_06505 | 1.25 | 4.09E−11 | Hypothetical protein |
| KYF39_06680 | 1.39 | 1.13E−18 | GLPGLI family protein |
| KYF39_06925 | 1.38 | 2.58E−12 | DUF4407 domain-containing protein |
| KYF39_07090 | 1.63 | 4.55E−30 | GLPGLI family protein |
| KYF39_07405 | 2.22 | 4.55E−10 | Outer membrane beta-barrel protein |
| KYF39_08495 | 1.88 | 9.91E−07 | Nitrous oxide reductase accessory protein NosL |
| KYF39_08510 | 1.32 | 9.53E−05 | Cytochrome c |
| KYF39_08515 | 1.76 | 1.44E−07 | c-type cytochrome |
| KYF39_08520 | 1.79 | 3.09E−04 | Hypothetical protein |
| KYF39_08525 | 1.74 | 3.60E−04 | Hypothetical protein |
| KYF39_08580 | 2.85 | 1.27E−02 | TonB-dependent receptor |
| KYF39_08585 | 1.10 | 1.04E−06 | Alpha/beta hydrolase |
| KYF39_08915 | 3.12 | 3.27E−03 | Hypothetical protein |
| KYF39_09630 | 1.21 | 4.55E−07 | Electron transfer flavoprotein subunit alpha/FixB family protein |