REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Alkaline phosphatase conjugated goat anti-mouse IgG (Fc specific) | Sigma | A1418 |
Chemicals, peptides, and recombinant proteins | ||
n-octyl-β-d-glucoside | Generon | O311S |
A8-35 amphipol | Anatrace | A835 |
RABV-G wt protein C-tagged | This paper | Based on Addgene #74288 |
RABV-G H270P mutant protein | This paper | Based on Addgene #74288 |
1112-1 IgG and Fab | This paper | N/A |
RVC20 IgG and Fab | This paper | N/A |
17C7 IgG and Fab | This paper | N/A |
RVC58 Fab | This paper | N/A |
Mouse polyclonal serum from mice immunized with Rabipur rabies vaccine | This paper | N/A |
Critical commercial assays | ||
Pierce Mouse IgG1 Fab and F(ab')2 Preparation kit | ThermoFisher Scientific | 44980 |
ExpiFectamine™ 293 Transfection Kit | ThermoFisher Scientific | A14524 |
Alexa Fluor 647 conjugation kit | ThermoFisher Scientific | A20186 |
EnduRen substrate | Promega | E6481 |
Horseradish-peroxidase-conjugated Streptactin | Iba Life Sciences | 2-1502-001 |
Deposited data | ||
Structure of RABV-G in complex with 17C7 and 1112-1 Fabs | PDB ID: 8A1E | https://www.wwpdb.org/ |
Map of RABV-G in complex with 17C7 and 1112-1 Fabs | EMDB ID: EMD-15073 | https://www.emdataresource.org/ |
Experimental models: Cell lines | ||
Expi293F cells | ThermoFisher Scientific | A14527 |
GripTite™ 293 MSR | ThermoFisher Scientific | R79507 |
1112-1 hybridoma | Wistar Institute, USA | N/A |
RABV-G H270P-mutant protein stable cell line | This paper based on Elegheert et al. (2018) | N/A |
Oligonucleotides | ||
Primers for RABV-G sequence amplification from Addgene plasmid #74288: F: TAGTAGGCGGCCGCCATG GTCCCACAGGCTCTCC R: TAGTAGTCTAGATTTACGCTTC CGGTTCGAGCCGTGTCTCGCCCCC |
This paper | N/A |
Recombinant DNA | ||
pVIP-ENTR | Balazs et al., 2013 | N/A |
pOPINVH | Nettleship et al., 2008 | Addgene #26041 |
pOPINVL | Nettleship et al., 2008 | Addgene #26040 |
pHR-CMV-TetO2-3C-Twin-Strep-IRES-Turquoise2 | Elegheert et al., 2018 | Addgene #113886 |
Plasmids for heavy and light chains of 1112-1 Fab | Synthesized | N/A |
Plasmids for heavy and light chains of RVC20 Fab | Synthesized based on patent | WO2016078761 |
Plasmids for heavy and light chains of RVC20 IgG | Synthesized based on patent | WO2016078761 |
Plasmids for heavy and light chains of 17C7 Fab | Synthesized based on patent | WO2006084006 |
Plasmids for heavy and light chains of 17C7 IgG | Synthesized based on patent | WO2006084006 |
Plasmids for heavy and light chains of RVC58 Fab | Synthesized based on patent | WO2016078761 |
pDSP1-7 | Synthesized based on Kondo et al. (2010) | N/A |
pDSP8-11 | Synthesized based on Kondo et al. (2010) | N/A |
Plasmid for RABV-G wt protein C-tagged | Modified with C-tag, based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G wt protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP wt protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H20L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H20A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H21L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H21A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H86L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H86A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H113L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H113A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H150A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H150L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H173L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H173A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H261L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H261A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H261L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H303L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H303A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H328A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H397A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H397L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H419A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H419L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H424L mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H424A mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G I268P mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP E269P mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H270P mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP H270P mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G L271P mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G-GFP L271P mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G L272P mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Plasmid for RABV-G H384P mutant protein | Synthesized based on sequence from Kim et al. (2016) | Based on Addgene #74288 |
Software and algorithms | ||
ImageJ | (Schneider et al., 2012) | https://imagej.nih.gov/ij/ |
cryoSPARC | Punjani et al. (2017) | https://cryosparc.com/ |
COOT v.0.8.9.2 | Emsley and Cowtan (2004) | https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
Phenix v.1.19.2 | Adams et al. (2002) | https://phenix-online.org/ |
MolProbity v.4.5.1 | Chen et al. (2010) | http://molprobity.biochem.duke.edu/ |
FlowJo v10 software | BD Biosciences | https://www.flowjo.com/ |
Biacore S200 v2 Evaluation software | Cytiva | N/A |
Prism 9.0 | GraphPad Software | https://www.graphpad.com/ |
PyMOL | Schrodinger | pymol.org |
UCSF Chimera/Chimera X | Pettersen et al., 2004; Pettersen et al., 2021 | https://www.cgl.ucsf.edu/chimera/; https://www.rbvi.ucsf.edu/chimerax/ |
BioRender | BioRender | https://biorender.com/ |
Other | ||
96-well white tissue culture plates | PerkinElmer | 6005680 |
μ-Plate black 96-well plates | Ibidi | 89626 |
CM5 chip | Cytiva | 29104988 |
Biacore S200 instrument | Cytiva | N/A |
Strep-Tactin®XT 4Flow® high capacity cartridge | Iba Life Sciences | 2-5027-001 |