Table 3.

Summary of total small RNA sequencing data and reads mapped to the Ceratobasidium isolate C02 genome assembly.

Fungal Culture	Raw Reads	After Quality Control and Size Selection a	Structural RNAs b	Clean Mappable Reads c	% strRNA	% Clean Mappable Reads	Count Mapped Reads d	% Mapped Reads	Count Unmapped Reads	% Unmapped Reads
BCD2	12,280,779	6354430	1210857	5143573	19.06	80.94	4387783	85.31	755790	14.69
BCD7	12,018,693	5979763	1538344	4441419	25.73	74.27	3839643	86.45	601776	13.55
BCD8	16,243,640	7241215	2201059	5040156	30.40	69.6	4423800	87.77	616356	12.23
FREE5	13,576,160	6657187	1234775	5422412	18.55	81.45	5134752	94.69	287660	5.31
FREE6	14,654,508	7783981	1654271	6129710	21.25	78.75	5801256	94.64	328454	5.36
FREE8	15,329,619	7720742	1532205	6188537	19.85	80.15	5875387	94.94	313150	5.06

^a Number of reads that passed quality control steps, including adapter and base quality trimming, and were 18—30 nt long, ^b Number of reads mapped to Rfam databases, including tRNA, rRNA, snoRNA, snRNA, siRNA, etc. ^c Number of reads remaining after quality and size selection and removal of structural RNAs, ^d Number of raw reads mapped to the Ceratobasidium C02 genome.