Table 2.
Statistics of the refined D5323–785 structures and the underlying Alphafold2 model.
| C6 | C1 | Alphafold2 1 | |
|---|---|---|---|
| EMDB accession codes | EMD-15574 | EMD-15575 | |
| Number of particles used | 28425 | 26710 | |
| Map resolution from Phenix (Å) | 3.7 | 4.6 | |
| FSC resolution 2 (Å) | 4.1 | 6.6 | |
| Model composition | |||
| PDB entry | 8APL | 8APM | |
| Prot. Res/ Nucleotides | 2694/0 | 2514/16 | |
| Non-hydrogen atoms | 21888 | 20723 | |
| Map correlation within mask | 0.73 | 0.69 | |
| Temperature factor (Å2) | 207 | 309 | |
| R.m.s. | |||
| Bond length deviations (Å) | 0.002 | 0.002 | 0.012 |
| Bond angles (°) | 0.476 | 0.414 | 1.669 |
| Validation | |||
| Molprobity score | 1.94 | 1.96 | 0.86 |
| All-atom Clashscore | 10.3 | 13.2 | 1.33 |
| Rotamer outliers (%) | 1.9 | 2.4 | 0.24 |
| Ramachandran plot | |||
| Outliers | 0.0 | 0.0 | 0.0 |
| Favored (%) | 96.8 | 97.8 | 98.5 |
| Allowed (%) | 3.2 | 2.2 | 1.5 |
1 Alphafold2 model of residues 323–785. 2 Based on a Fourier shell correlation of 0.143.