Table 2.
ID | DS | Chr | Start | Gene | Amino acid change | Het | 1000 g/Esp | SIFT | Polyphen | Clinic | ACMG | Evidence | dbSNP |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | LQTs | chr11 | 2,604,664 | KCNQ1 | NM_000218:exon7:c.922-1G > C | ± | – | – | – | P | P | PVS1, PM2_Supporting, PP4, PP1 | rs387906290 |
5 | Brs | chr3 | 38,598,739 | SCN5A | NM_001160161:exon23:c.G4120T:p.A1374S | ± | 0.001 | 0.00(D) | 1.00(D) | LP | VUS | PM2_Supporting, PM1, PP3 | rs200034939 |
8 | Brs | chr3 | 38,640,451 | SCN5A | NM_000335:exon13:c.C1981T:p.R661W | ± | < 0.001 | 0.00(D) | 1.00(D) | P | VUS | PM2_Supporting, PP3 | rs199473139 |
10 | Brs | chr3 | 38,622,757 | SCN5A | NM_000335:exon17:c.C2893T:p.R965C | ± | 0.001 | 0.00(D) | 1.00(D) | LP | VUS | PM2_Supporting, PS4_M, PS3_Supporting, PP3 | rs199473180 |
11 | Brs | chr18 | 29,116,333 | DSG2 | NM_001943:exon11:c.T1592G:p.F531C | ± | – | 0.00(D) | 1.00(D) | LP | LP | PM2_Supporting, PM3_Strong, PS3_Supporting | rs200484060 |
chr3 | 38,598,739 | SCN5A | NM_001160161:exon23:c.G4120T:p.A1374S | ± | 0.001 | 0.00(D) | 1.00(D) | LP | VUS | PM2_Supporting, PS4_Supporting, PP3 | rs200034939 | ||
13 | LQTs | chr3 | 38,592,170 | SCN5A | NM_001099405:exon27:c.G5639A:p.R1880H | ± | < 0.001 | 0.06(T) | 0.99(D) | P | VUS | PM2_Supporting, PS4_Supporting, PP3 | rs370694515 |
18 | Brs | chr7 | 150,644,473 | KCNH2 | NM_172057:exon9:c.G2075A:p.R692Q | ± | 0.001 | 0.58(T) | 1.00(D) | LP | VUS | PM2_Supporting, PP2 | rs199473020 |
19 | LQTs | chr11 | 2,604,664 | KCNQ1 | NM_000218:exon7:c.922-1G > C | ± | – | – | – | P | P | PVS1, PM2_Supporting, PP4, PP1 | rs387906290 |
21 | LQTs | chr7 | 150,649,569 | KCNH2 | NM_001204798:exon2:c.G481A:p.D161N | ± | – | 0.00(D) | 1.00(D) | P | LP | PM2_Supporting, PS4_M, PS3_Supporting, PP2, PP3 | rs199472912 |
22 | LQTs | chr11 | 2,593,286 | KCNQ1 | NM_000218:exon5:c.C727A:p.R243S | ± | – | 0.00(D) | 1.00(D) | P | LP | PM2_Supporting, PM5, PM1, PP3 | rs199472713 |
DS diseases, LQTs long QT syndrome, Brs Brugada syndrome, Chr chromosome, 1000G/Esp 1000genomes (2015 version) or Esp6500 database, SNP single nucleotide polymorphism, PP polyphen-2, D damaging, B benign, T tolerated, ± heterozygous carrier, P pathogenic, LP likely pathogenic, – no report