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. 2022 Sep 26;32(18):3952–3970.e8. doi: 10.1016/j.cub.2022.07.038
REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, peptides, and recombinant proteins

Drierite, 8 mesh ACROS Organics / Fisher Scientfic Cat#10185130
Schneider's culture medium Gibco / Thermo Fisher Scientific Cat#21720024
d(–)-2-amino-5-phosphonovaleric acid Sigma-Aldrich Cat#A8054
DNQX Sigma-Aldrich Cat#D0540
Tetrodotoxin Abcam Cat#ab120054
DPBS (calcium and magnesium free) Gibco / Thermo Fisher Scientific Cat#14190086
Papain Sigma-Aldrich Cat#P4762
Collagenase I Sigma-Aldrich Cat#C2674
DAPI Thermo Fisher Scientific Cat#D1306
BSA New England Biolabs Cat#B9000S
D-Serine Tokyo Chemical Industry Cat#S0033
L-Serine Tokyo Chemical Industry Cat#S0035
Glycine Sigma-Aldrich Cat#G8898
N-methyl-D-aspartic acid Sigma-Aldrich Cat#M3262
Acetylcholine Sigma-Aldrich Cat#A6625
Adenosine Tri-Pphosphate Sigma-Aldrich Cat#A2383
Glutamate Sigma-Aldrich Cat#G0355000
Adenosine Sigma-Aldrich Cat#A9251
Tetanus toxin Sigma-Aldrich Cat#T3194
α,β-methylene adenosine 5’-diphosphate Sigma-Aldrich Cat#M3763
4-Methylcyclohexanol (98%) Sigma-Aldrich Cat#153095
3-octanol (99%) Sigma-Aldrich Cat#218405

Critical commercial assays

Chromium Single Cell 3’ Library & Gel Bead Kit v2, 4 rxns 10X Genomics Cat#PN-120267
LightCycler 480 Probes Master Roche Cat#4887301001
RNeasy Mini Kit Qiagen Cat#74104
SuperScript III First-Strand Synthesis SuperMix Invitrogen Cat#18080400
Universal Probe Library Roche Cat#04683633001; Cat#04869877001
LightCycler 480 Probes Master Roche Cat#4887301001

Deposited data

Raw sequencing data and processed dataset This study GEO: GSE207799
Drosophila melanogaster reference genome (dm6) and gene annotations (FlyBase, release 6.25, FB2018_06) Thurmond et al.116 https://flybase.org/
Full Adult Female Brain (FAFB) transmission electron microscope (TEM) dataset Zheng et al.85 https://temca2data.org/

Experimental models: Organisms/strains

Drosophila: 0273-GAL4 Burke et al.117 and Gohl et al.118 N/A
Drosophila: w; repo-GAL4, tub-GAL80ts; repo-GAL4 S. Schirmeir & C. Klämbt N/A
Drosophila: R86E01-GAL4 Bloomington Drosophila Stock Center; Kremer et al.58 RRID:BDSC_45914
Drosophila: R85G01-GAL4 Bloomington Drosophila Stock Center; Kremer et al.58 RRID:BDSC_40436
Drosophila: R66C08-GAL4 Bloomington Drosophila Stock Center RRID:BDSC_49412
Drosophila: UAS-mCherry NA Lab stock
Drosophila: UAS-aayRNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0454865
Drosophila: InosRNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0472636
Drosophila: UAS-GstD1RNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0475105
Drosophila: UAS-CG33970RNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0462630
Drosophila: UAS-Socs36ERNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0469597
Drosophila: UAS-IrcRNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0472971
Drosophila: UAS-GstD9RNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0475656
Drosophila: UAS-Obp44aRNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0464970
Drosophila: UAS-Sod3RNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0471232
Drosophila: UAS-CG9377RNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0464792
Drosophila: UAS-Cyp28d1RNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0470866
Drosophila: UAS-Pcyt2RNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0477620
Drosophila: UAS-DratRNAi Vienna Drosophila RNAi Center RRID:FlyBase_FBst0480136
Drosophila: UAS-CG33970 (osy) Bernard Moussian; Wang et al.119 N/A
Drosophila: UAS-aay FlyORF RRID:FlyBase_FBst0501667
Drosophila: UAS-GstD9 FlyORF F004171
Drosophila: UAS-Obp44a FlyORF F003929
Drosophila: UAS-Sod3 FlyORF F003855
Drosophila: UAS-Daao1 Dai et al.70 N/A
Drosophila: UAS-Shits1 Kitamoto120 Lab stock
Drosophila: UAS-Kir2.1 Paradis et al.121 Lab stock
Drosophila: UAS-TNT E Sweeney et al.122 Lab stock
Drosophila: UAS-GCamP7f Dana et al.123 RRID:BDSC_79031; RRID:BDSC_80906
Drosophila: NMDAR1K558Q Nigel Atkinson; Troutwine et al.74 N/A
Drosophila: NMDAR1F654A Nigel Atkinson; Troutwine et al.74 N/A

Oligonucleotides

TTCGCGAGGATGAATACGAT This study SdhA – FWD
CACGAGAGCGTGTGCTTG This study SdhA – REV
AAAAAGCTCCGGGAAAAGG This study GAPDH – FWD
AATTCCGATCTTCGACATGG This study GAPDH – REV
CACCATGAAGAACGCTGTTG This study Obp44 – FWD
GCTTGTAGTCGGAGGCAGAG This study Obp44 – REV
CCGTTTCCACGACATTGAGT This study Drat – FWD
GTTAATGCCTTGATGGGGAAC This study Drat – REV
TGGCTCCCTTTATCCCAAG This study GstD9 – FWD
AAAAACAGGCGCTGATTGAT This study GstD9 – REV
CGGTGACTCCCTTACCGTAG This study GstD1 – FWD
TTTGGCCACCTCGAATGT This study GstD1 – REV
AAAAAGCCAGCAAACCAAAA This study Socs36E – FWD
AGGTGATGACCCATTGGAAG This study Socs36E – REV
TGCAATGGGTGGAATTCAG This study Irc – FWD
ACCATTTCGAAGCAGGAATC This study Irc – REV
CCCCTGAAAAACGTCTATGC This study aay – FWD
AGCTATCGTATTCGCCCAAA This study aay – REV
AGTGCTGTAATATCCCCGATAAAC This study CG9377 – FWD
CAGAGATCATGGCGTCCTC This study CG9377 – REV
ACCGCTCTTTATGGACTTTGAG This study Pcyt2 – FWD
GCATGGCCTTGTCATCGTA This study Pcyt2 – REV

Software and algorithms

CellRanger 10X Genomics https://support.10xgenomics.com/single-cell-gene-expression/software/overview/welcome; RRID:SCR_017344
R R Development Core Team, 2008 http://www.R-project.org/; RRID:SCR_001905
Seurat v3 Hafemeister and Satija124 and Stuart et al.125 https://satijalab.org/seurat/; RRID:SCR_016341
DoubletFinder McGinnis et al.126 https://github.com/chris-mcginnis-ucsf/DoubletFinder; RRID:SCR_018771
ZINB-WaVE Risso et al.46 and Van den Berge et al.47 https://github.com/drisso/zinbwave
DESeq2 Love et al.48 https://bioconductor.org/packages/release/bioc/html/DESeq2.html; RRID:SCR_015687
edgeR Robinson et al.49 and McCarthy et al.127 https://bioconductor.org/packages/release/bioc/html/edgeR.html; RRID:SCR_012802
ClusterProfiler Yu et al.128 https://github.com/YuLab-SMU/clusterProfiler
GOplot Walter et al.129 https://wencke.github.io/
ScanImage 3.8 Pologruto et al.130 http://scanimage.vidriotechnologies.com
Fiji NIH; Schindelin et al.131 https://fiji.sc/
FlyWire Dorkenwald et al.84 https://flywire.ai/
Neuroglancer Dorkenwald et al.84 https://github.com/google/neuroglancer
CAVEclient https://github.com/seung-lab/CAVEclient
FAFBseg v.1.4 https://github.com/navis-org/fafbseg-py
Navis v.0.6 https://github.com/navis-org/navis
trimesh https://github.com/mikedh/trimesh
skeletor 1.1 Au et al.132 https://github.com/navis-org/skeletor
Blender 3.0 Blender Community https://www.blender.org/download/releases/3-0/
GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific-software/prism/; RRID:SCR_002798
Adobe Illustrator Adobe Systems https://www.adobe.com/uk/products/illustrator.html; RRID:SCR_010279

Other

10 mm CellTrix strainer Sysmex Cat#04-0042-2314
Fuchs-Rosenthal haemocytometer VWR Cat#631–1096
Fisherbrand chromatography paper 180g/m2 460x570 mm Fisher Scientific Cat#15649494