Chemicals, peptides, and recombinant proteins |
|
Drierite, 8 mesh |
ACROS Organics / Fisher Scientfic |
Cat#10185130 |
Schneider's culture medium |
Gibco / Thermo Fisher Scientific |
Cat#21720024 |
d(–)-2-amino-5-phosphonovaleric acid |
Sigma-Aldrich |
Cat#A8054 |
DNQX |
Sigma-Aldrich |
Cat#D0540 |
Tetrodotoxin |
Abcam |
Cat#ab120054 |
DPBS (calcium and magnesium free) |
Gibco / Thermo Fisher Scientific |
Cat#14190086 |
Papain |
Sigma-Aldrich |
Cat#P4762 |
Collagenase I |
Sigma-Aldrich |
Cat#C2674 |
DAPI |
Thermo Fisher Scientific |
Cat#D1306 |
BSA |
New England Biolabs |
Cat#B9000S |
D-Serine |
Tokyo Chemical Industry |
Cat#S0033 |
L-Serine |
Tokyo Chemical Industry |
Cat#S0035 |
Glycine |
Sigma-Aldrich |
Cat#G8898 |
N-methyl-D-aspartic acid |
Sigma-Aldrich |
Cat#M3262 |
Acetylcholine |
Sigma-Aldrich |
Cat#A6625 |
Adenosine Tri-Pphosphate |
Sigma-Aldrich |
Cat#A2383 |
Glutamate |
Sigma-Aldrich |
Cat#G0355000 |
Adenosine |
Sigma-Aldrich |
Cat#A9251 |
Tetanus toxin |
Sigma-Aldrich |
Cat#T3194 |
α,β-methylene adenosine 5’-diphosphate |
Sigma-Aldrich |
Cat#M3763 |
4-Methylcyclohexanol (98%) |
Sigma-Aldrich |
Cat#153095 |
3-octanol (99%) |
Sigma-Aldrich |
Cat#218405 |
|
Critical commercial assays |
|
Chromium Single Cell 3’ Library & Gel Bead Kit v2, 4 rxns |
10X Genomics |
Cat#PN-120267 |
LightCycler 480 Probes Master |
Roche |
Cat#4887301001 |
RNeasy Mini Kit |
Qiagen |
Cat#74104 |
SuperScript III First-Strand Synthesis SuperMix |
Invitrogen |
Cat#18080400 |
Universal Probe Library |
Roche |
Cat#04683633001; Cat#04869877001 |
LightCycler 480 Probes Master |
Roche |
Cat#4887301001 |
|
Deposited data |
|
Raw sequencing data and processed dataset |
This study |
GEO: GSE207799
|
Drosophila melanogaster reference genome (dm6) and gene annotations (FlyBase, release 6.25, FB2018_06) |
Thurmond et al.116
|
https://flybase.org/ |
Full Adult Female Brain (FAFB) transmission electron microscope (TEM) dataset |
Zheng et al.85
|
https://temca2data.org/ |
|
Experimental models: Organisms/strains |
|
Drosophila: 0273-GAL4 |
Burke et al.117 and Gohl et al.118
|
N/A |
Drosophila: w; repo-GAL4, tub-GAL80ts; repo-GAL4 |
S. Schirmeir & C. Klämbt |
N/A |
Drosophila: R86E01-GAL4 |
Bloomington Drosophila Stock Center; Kremer et al.58
|
RRID:BDSC_45914 |
Drosophila: R85G01-GAL4 |
Bloomington Drosophila Stock Center; Kremer et al.58
|
RRID:BDSC_40436 |
Drosophila: R66C08-GAL4 |
Bloomington Drosophila Stock Center |
RRID:BDSC_49412 |
Drosophila: UAS-mCherry |
NA |
Lab stock |
Drosophila: UAS-aayRNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0454865 |
Drosophila: InosRNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0472636 |
Drosophila: UAS-GstD1RNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0475105 |
Drosophila: UAS-CG33970RNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0462630 |
Drosophila: UAS-Socs36ERNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0469597 |
Drosophila: UAS-IrcRNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0472971 |
Drosophila: UAS-GstD9RNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0475656 |
Drosophila: UAS-Obp44aRNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0464970 |
Drosophila: UAS-Sod3RNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0471232 |
Drosophila: UAS-CG9377RNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0464792 |
Drosophila: UAS-Cyp28d1RNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0470866 |
Drosophila: UAS-Pcyt2RNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0477620 |
Drosophila: UAS-DratRNAi
|
Vienna Drosophila RNAi Center |
RRID:FlyBase_FBst0480136 |
Drosophila: UAS-CG33970 (osy) |
Bernard Moussian; Wang et al.119
|
N/A |
Drosophila: UAS-aay
|
FlyORF |
RRID:FlyBase_FBst0501667 |
Drosophila: UAS-GstD9
|
FlyORF |
F004171 |
Drosophila: UAS-Obp44a
|
FlyORF |
F003929 |
Drosophila: UAS-Sod3
|
FlyORF |
F003855 |
Drosophila: UAS-Daao1
|
Dai et al.70
|
N/A |
Drosophila: UAS-Shits1
|
Kitamoto120
|
Lab stock |
Drosophila: UAS-Kir2.1
|
Paradis et al.121
|
Lab stock |
Drosophila: UAS-TNT E |
Sweeney et al.122
|
Lab stock |
Drosophila: UAS-GCamP7f |
Dana et al.123
|
RRID:BDSC_79031; RRID:BDSC_80906 |
Drosophila: NMDAR1K558Q
|
Nigel Atkinson; Troutwine et al.74
|
N/A |
Drosophila: NMDAR1F654A
|
Nigel Atkinson; Troutwine et al.74
|
N/A |
|
Oligonucleotides |
|
TTCGCGAGGATGAATACGAT |
This study |
SdhA – FWD |
CACGAGAGCGTGTGCTTG |
This study |
SdhA – REV |
AAAAAGCTCCGGGAAAAGG |
This study |
GAPDH – FWD |
AATTCCGATCTTCGACATGG |
This study |
GAPDH – REV |
CACCATGAAGAACGCTGTTG |
This study |
Obp44 – FWD |
GCTTGTAGTCGGAGGCAGAG |
This study |
Obp44 – REV |
CCGTTTCCACGACATTGAGT |
This study |
Drat – FWD |
GTTAATGCCTTGATGGGGAAC |
This study |
Drat – REV |
TGGCTCCCTTTATCCCAAG |
This study |
GstD9 – FWD |
AAAAACAGGCGCTGATTGAT |
This study |
GstD9 – REV |
CGGTGACTCCCTTACCGTAG |
This study |
GstD1 – FWD |
TTTGGCCACCTCGAATGT |
This study |
GstD1 – REV |
AAAAAGCCAGCAAACCAAAA |
This study |
Socs36E – FWD |
AGGTGATGACCCATTGGAAG |
This study |
Socs36E – REV |
TGCAATGGGTGGAATTCAG |
This study |
Irc – FWD |
ACCATTTCGAAGCAGGAATC |
This study |
Irc – REV |
CCCCTGAAAAACGTCTATGC |
This study |
aay – FWD |
AGCTATCGTATTCGCCCAAA |
This study |
aay – REV |
AGTGCTGTAATATCCCCGATAAAC |
This study |
CG9377 – FWD |
CAGAGATCATGGCGTCCTC |
This study |
CG9377 – REV |
ACCGCTCTTTATGGACTTTGAG |
This study |
Pcyt2 – FWD |
GCATGGCCTTGTCATCGTA |
This study |
Pcyt2 – REV |
|
Software and algorithms |
|
CellRanger |
10X Genomics |
https://support.10xgenomics.com/single-cell-gene-expression/software/overview/welcome; RRID:SCR_017344
|
R |
R Development Core Team, 2008 |
http://www.R-project.org/; RRID:SCR_001905
|
Seurat v3 |
Hafemeister and Satija124 and Stuart et al.125
|
https://satijalab.org/seurat/; RRID:SCR_016341
|
DoubletFinder |
McGinnis et al.126
|
https://github.com/chris-mcginnis-ucsf/DoubletFinder; RRID:SCR_018771
|
ZINB-WaVE |
Risso et al.46 and Van den Berge et al.47
|
https://github.com/drisso/zinbwave |
DESeq2 |
Love et al.48
|
https://bioconductor.org/packages/release/bioc/html/DESeq2.html; RRID:SCR_015687
|
edgeR |
Robinson et al.49 and McCarthy et al.127
|
https://bioconductor.org/packages/release/bioc/html/edgeR.html; RRID:SCR_012802
|
ClusterProfiler |
Yu et al.128
|
https://github.com/YuLab-SMU/clusterProfiler |
GOplot |
Walter et al.129
|
https://wencke.github.io/ |
ScanImage 3.8 |
Pologruto et al.130
|
http://scanimage.vidriotechnologies.com |
Fiji |
NIH; Schindelin et al.131
|
https://fiji.sc/ |
FlyWire |
Dorkenwald et al.84
|
https://flywire.ai/ |
Neuroglancer |
Dorkenwald et al.84
|
https://github.com/google/neuroglancer |
CAVEclient |
|
https://github.com/seung-lab/CAVEclient |
FAFBseg v.1.4 |
|
https://github.com/navis-org/fafbseg-py |
Navis v.0.6 |
|
https://github.com/navis-org/navis |
trimesh |
|
https://github.com/mikedh/trimesh |
skeletor 1.1 |
Au et al.132
|
https://github.com/navis-org/skeletor |
Blender 3.0 |
Blender Community |
https://www.blender.org/download/releases/3-0/ |
GraphPad Prism 9 |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/; RRID:SCR_002798
|
Adobe Illustrator |
Adobe Systems |
https://www.adobe.com/uk/products/illustrator.html; RRID:SCR_010279
|
|
Other |
|
10 mm CellTrix strainer |
Sysmex |
Cat#04-0042-2314 |
Fuchs-Rosenthal haemocytometer |
VWR |
Cat#631–1096 |
Fisherbrand chromatography paper 180g/m2 460x570 mm |
Fisher Scientific |
Cat#15649494 |