Table 1.
Public scRNA-seq datasets used in the current study.
| Dataset | Description | Species | Method | N | Analyses | |
|---|---|---|---|---|---|---|
| Cells (% subset) | Cell Types | |||||
| Tabula Muris69 | Pan-atlas | Mm | 10X | 100,000 (99%) | 100 | A, B, C |
| Tabula Sapiens60 | Pan-atlas | Hs | 10X | 100,000 (21%) | 158 | A, B, C |
| Cao 20193 | Organogenesis | Mm | sci-RNAseq3 | 50,000 (100%) | 37 | A, B, C, E |
| Cao 202070 | Fetus | Hs | sci-RNAseq3 | 100,000 (26%) | 77 | A, B, C, D, E |
| Pijuan-Sala 201921 | Gastrulation | Mm | 10X | 100,000 (77%) | 38 | A, B, C, D, E |
| Tyser 202117 | Gastrulation | Hs | SMART-seq2 | 1,195 (100%) | 18 | A, B, C, D, E |
| La Manno 202127 | Developing brain | Mm | 10X | 100,000 (39%) | 16, 136 | A, B, C, E |
| Zeisel 201861 | Adolescent brain | Mm | 10X | 22,238 (100%) | 39 | A, B, C, E |
| Han 202271 | neural differentiation | Mm | sci-RNAseq-3 | 26,117 (100%) | - | E |
| Ochocka 202125 | immune cells | Mm | 10X | 40,401 (100%) | - | E |
Analyses in which the datasets were used are indicted as A: DE methods, B: cluster resolutions, C: cell type gene sets, D: Miko scoring, E: gene program discovery.
Hs Homo sapiens (human), Mm Mus musculus (mouse).