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. 2022 Oct 28;13:6420. doi: 10.1038/s41467-022-34137-4

Table 1.

Comparison of canthaxanthin dihedral angles observed in OCP structures in the three states: Dark, I1 and I4. Dihedral angles were measured using atomic PDB coordinates for carbon atoms

Dark (this study) 1 m (this study) 10 m (this study) Syn OCPCAN (4XB5) Syn OCPECH (5TUX) Arth OCPhECH (5UI2 -CA) Arth OCPhECH (5UI2 -CB)
C5-C6-C7-C8 (β1 ring) 153 157.8 −35.6 116.3 131.8 118.5 131.9
C6-C7-C8-C9 160 163.1 159.9 175.4 176.7 172.8 174.7
C7-C8-C9-C10 167 160.4 167 −155.3 −168.7 −163.7 −176.8
C8-C9-C10-C11 164.9 162.4 164.9 175.8 174.9 177.9 171.1
C9-C10-C11-C12 −176.1 −166.1 −176.2 178.8 −179.5 165.2 173.6
C10-C11-C12-C13 176.9 −172.8 177.0 174.4 173.7 175.4 175.5
C11-C12-C13-C14 177.6 163 177.7 167.8 170 177.5 175.9
C12-C13-C14-C15 172.7 175.4 172.7 173 172.8 171 170
C13-C14-C15-C15’ 175 −176.2 175 −171.4 177.8 −175.7 171.5
C14-C15-C15’-C14’ 172.4 144.9 172.4 172.7 171.8 170.7 171.4
C15-C15’-C14’-C13’ −175.2 163.8 −175.2 169.8 −178.7 179.6 −168.2
C15’-C14’-C13’-C12’ 171.5 −177.5 171.5 173 172.2 172.8 169.8
C14’-C13’-C12’-C11’ −170.9 −148.1 −170.9 −153.3 −165.9 −161.6 171.4
C13’-C12’-C11’-C10’ 172 171 172 173.1 172.8 174.8 170.9
C12’-C11’-C10’-C9’ −175.9 167.5 −175.9 171.9 −179.2 170.3 −158.8
C11’-C10’-C9’-C8’ 172.9 173.3 172.8 175.2 174.8 174 −179.7
C10’-C9’-C8’-C7’ 178.4 −23 178.3 −160.3 −175.1 −170.2 174.9
C9’-C8’-C7’-C6’ 176.3 −171.6 176.3 177.6 178.5 177.3 178.6
C8’-C7’-C6’-C5’ (β2 ring) −45.3 145.1 −45.3 −72.1 −58.6 −66 −51.9
RMSD 0.436 0.706 0.436

Dihedral angles undergoing substantial change upon illumination are highlighted in bold.

RMSD was calculated with Pymol Align using PDB entry 4XB5 as a target selection.

Deposited dihedral angles for CAN-binding (PDB entry 4XB5), ECN-binding (5TUX), and 3′-hECN-binding (5UI2) OCPs are also included for comparison.