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. 2022 Oct 26;3(4):101785. doi: 10.1016/j.xpro.2022.101785
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit monoclonal anti-BRD4 long isoform (Dilution 1:50) Cell Signaling Technology Cat# 13440; RRID: AB_2687578
Rabbit monoclonal anti-Vinculin (Dilution 1:50) Cell Signaling Technology Cat# 13901; RRID: AB_2728768

Bacterial and virus strains

NEB 5-alpha Competent E.coli (High Efficiency) New England Biolabs Cat# C2987H

Chemicals, peptides, and recombinant proteins

Betaine solution (5 M) Sigma-Aldrich Cat# B0300-5VL
Ampicillin antibiotic, sodium salt 25 g VWR Cat# 71003-352
Restriction enzyme - BamHI New England Biolabs Cat# R0136S
Restriction enzyme - EcoRI New England Biolabs Cat# R0101S
Restriction enzyme - MluI New England BioLabs Cat# R0198S
NEBuffer™ 3:1 (Provided with restriction enzyme) New England Biolabs Cat# B7203S
Luria Broth Base Invitrogen Cat# 12795-084
SOC Outgrowth Medium New England Biolabs Cat# B9020
Molecular Biology Grade Agarose LE Thomas Scientific Cat# C9961-57
Phusion™ High-Fidelity DNA Polymerase (2 U/μL) Thermo Scientific™ Cat# F-530L
Phusion™ G-C Buffer (Provided with Polymerase) Thermo Scientific™ Cat# F-530L
10 mM dNTP Mix Invitrogen Cat# 100004893
Cold Fusion Cloning Kit with Competent Cells System Biosciences Cat# MC010A-1
QIAquick Gel Extraction Kit QIAGEN Cat# 28704
QIAprep Spin Miniprep Kit QIAGEN Cat# 27106
CompactPrep Plasmid Maxi Kit QIAGEN Cat# 12863
Blasticidin antibiotic, S HCl (10 mg/mL), liquid Gibco, Fisher Scientific Cat# A1113903

Critical commercial assays

ProteinSimple Wes 66–440 kDa separation module ProteinSimple (Bio-Techne) Cat# SM-W008

Deposited data

NCBI Reference Sequence for assembly NM_058243.3 NCBI/NIH https://www.ncbi.nlm.nih.gov/nuccore/NM_058243.3

Oligonucleotides

Cold fusion cloning BRD4-L forward primer: 5′ GGTGTCGTGACG
CGGCTATGTCTGCGGAGAGCGG 3′
This paper CF-BRD4-L_pLV-F
Cold fusion cloning BRD4-L reverse primer: 5′ CCATGGTGGCGGATCCC
TAGGTGCGCTCAGAAAAGA 3′
This paper CF-BRD4-L_pLV-R

Recombinant DNA

LentiV_Blast mammalian stable overexpression plasmid Addgene; (Tarumoto et al., 2020) Cat# 111887; RRID: Addgene_111887
pcDNA5-Flag-BRD4-WT transient expression plasmid Addgene, a gift from Dr. Kornelia Polyak (Shu et al., 2016) Cat# 90331; RRID: Addgene_90331
LentiV_Puro mammalian stable overexpression plasmid Addgene, a gift from Christopher Vakoc (Tarumoto et al., 2020) Cat# 111886; RRID: Addgene_111886
pLentiTRE/rtTA inducible stable overexpression plasmid A gift from Trudy Oliver (Bieniasz et al., 2015) N/A
LentiV_Blast-BRD4-L stable overexpression plasmid This paper LentiV_Blast-BRD4-L
LentiV_Puro-BRD4-L stable overexpression plasmid This paper LentiV_Puro-BRD4-L
pLentiTRE/rtTA-BRD4-L inducible overexpression plasmid This paper pLentiTRE/rtTA-BRD4-L

Software and algorithms

GenBank NCBI/NIH https://www.ncbi.nlm.nih.gov/genbank/ RRID: SCR_002760
Oligo Calculator, version 3.27 Northwestern University (Kibbe, 2007) http://biotools.nubic.northwestern.edu/OligoCalc.html
Image Lab, version 6.0.1 Bio-Rad RRID: SCR_014210
Compass software for SW, version 4.0.0 ProteinSimple (Bio-Techne) https://www.proteinsimple.com/compass/downloads/

Other

UltraPure™ DNase/RNase Free distilled water Invitrogen™ Cat# 10977015
GeneRuler 100 bp Plus DNA Ladder Thermo Scientific™ Cat# SM0323
GeneRuler 1 kb Plus DNA Ladder Thermo Scientific™ Cat# SM1334
DS-11+Spectrophotometer DeNovix N/A
Master Cycler Pro thermocycler Eppendorf N/A
Mini-sub Cell GT System gel running system Bio-Rad N/A
Chemidoc MP Imaging System Bio-Rad N/A
New Brunswick Innova 40 benchtop shaker Innova N/A
Eppendorf ThermoMixer C Eppendorf N/A
ProteinSimple Wes System ProteinSimple (Bio-Techne) N/A