Table 3.
Genes positively associated with the pls expression
| Gene id | Description | High vs. wild | Del vs. wild | ||
|---|---|---|---|---|---|
| log2FC | padjust | log2FC | padjust | ||
| Gene1700 | Membrane protein | 1.70 | 0.00 | − 1.23 | 0.00 |
| Gene3535 | Hypothetical protein | 1.01 | 0.00 | − 1.45 | 0.00 |
| Gene3920 | PTS lactose transporter subunit IIC (fruA) | 3.01 | 0.00 | − 2.24 | 0.00 |
| Gene3921 | 1-phosphofructokinase (fruK) | 2.58 | 0.00 | − 1.83 | 0.00 |
| Gene3922 | DeoR family transcriptional regulator (fruR2) | 2.66 | 0.00 | − 1.57 | 0.00 |
| Gene3951 | Transcriptional regulator | 1.24 | 0.00 | − 1.19 | 0.04 |
| Gene4012 | Acyl-CoA dehydrogenase | 1.37 | 0.00 | − 1.81 | 0.00 |
| Gene4474 | Hypothetical protein (aceF) | 2.15 | 0.00 | − 1.92 | 0.00 |
| Gene4475 | Branched-chain alpha keto acid dehydrogenase E1 subunit beta (pdhB) | 2.25 | 0.00 | − 1.74 | 0.00 |
| Gene4476 | Pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (pdhA) | 1.70 | 0.00 | − 1.39 | 0.00 |
| Gene4484 | Phenylacetate-CoA oxygenase subunit PaaA | 1.06 | 0.00 | − 1.54 | 0.00 |
| Gene4865 | Hypothetical protein | 1.08 | 0.00 | − 1.04 | 0.00 |
| Gene5032 | 3-oxoacyl-ACP synthase (fabF) | 1.19 | 0.00 | − 2.51 | 0.00 |
| Gene5033 | Beta-ketoacyl synthase (fabF) | 2.38 | 0.00 | − 1.91 | 0.00 |
| Gene5034 | 3-oxoacyl-ACP synthase (fabF) | 1.36 | 0.00 | − 1.35 | 0.00 |
| Gene5035 | Hypothetical protein | 1.23 | 0.00 | − 1.59 | 0.00 |
| Gene5144 | Hypothetical protein | 1.49 | 0.00 | − 1.51 | 0.00 |
| Gene5145 | Hypothetical protein | 1.03 | 0.00 | − 1.48 | 0.00 |
| Gene5342 | Hypothetical protein | 1.28 | 0.02 | − 2.13 | 0.03 |
| Gene5874 | Secreted hydrolase | 1.29 | 0.00 | − 2.12 | 0.00 |
| Gene7029 | Alpha-glucosidase | 1.65 | 0.00 | − 1.02 | 0.00 |
| Gene7078 | MFS transporter | 2.53 | 0.00 | − 1.72 | 0.00 |
| Gene7079 | Hypothetical protein | 2.35 | 0.00 | − 2.49 | 0.00 |
| Gene7080 | Formyl-CoA transferase | 2.54 | 0.00 | − 2.56 | 0.00 |
| Gene7081 | Acetolactate synthase | 2.81 | 0.00 | − 2.95 | 0.00 |
| Gene7082 | Hypothetical protein | 2.08 | 0.00 | − 3.30 | 0.00 |
| Gene8145 | Hypothetical protein | 1.13 | 0.00 | − 1.30 | 0.02 |
| Gene8286 | Hypothetical protein | 1.07 | 0.02 | − 1.63 | 0.03 |
| Gene8330 | Hypothetical protein | 1.61 | 0.00 | − 2.77 | 0.00 |
| Gene8375 | Heat-shock protein Hsp20 | 1.28 | 0.00 | − 4.38 | 0.00 |
| Gene8398 | Hypothetical protein | 1.03 | 0.03 | − 1.90 | 0.02 |
| Gene8431 | Galactokinase | 1.11 | 0.00 | − 4.17 | 0.00 |
| Gene8436 | MFS transporter | 1.23 | 0.00 | − 1.45 | 0.03 |
| Gene8456 | DUF2306 domain-containing protein | 1.40 | 0.02 | − 2.45 | 0.03 |
| Gene8458 | Transporter | 1.83 | 0.00 | − 4.30 | 0.01 |