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. 2022 Oct 29;13:6484. doi: 10.1038/s41467-022-34186-9

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Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — Top left: Omicron variant distribution by New Zealand district health board, for cases reported between 8 Dec 2021 and 15 June 2022. The Delta lineage (AY.39.1.1) is omitted from the map. Top right: New Zealand genome sequencing, coloured by lineage. A border case is one either in managed isolation after arriving in New Zealand (MIQ (managed isolation and quarantine) era), or one with overseas travel history in the past seven days (post-MIQ era). BA.2.12.1 is not included in BA.2 metrics. Bottom left: Estimated number of community cases of each variant. Bottom right: Number and percentage of cases which were referred to genomic sequencing each week. Almost 100% of the genomes were labelled as ‘community’ between Feb-Apr due to missing epidemiological data.