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. 2022 Oct 18;13:1010249. doi: 10.3389/fpls.2022.1010249

Quantitative trait loci (QTL) detected in genome-wide association studies employing seven models at p = 0.0001 (LOD ≥ 4) for Fusarium head blight severity in winter wheat from the breeding, genebank, and combined sets (Zakieh et al., 2021). Chr., chromosome; FAF, favorable allele frequencies. The asterisk means also detected by these models at p = 0.0002. A, detected above Bonferroni corrected threshold (α = 0.05). B, the marker effects are estimated for only GLM, MLM, and CMLM and FarmCPU in GAPIT (Lipka et al., 2012).

QTL Marker Chr. Position (cM) FAF Effect Model(s) Set
SLUfhbchr1B.1 BS00021877_51 1B 154.58 0.06 NA Blink Combined
SLUfhbchr2A.2 BobWhite_c16923_64 2A 125.33 0.06 NA Blink; (SUPER)* Combined
SLUfhbchr3A.3 Kukri_rep_c89183_282 3A 15.05 0.64 27.84 to 28.10 GLM, CMLM Combined
SLUfhbchr3B.4 wsnp_Ex_c34975_43204180 3B 67.45 0.95(CS), 0.94 (BS), 0.97(GS) 65.78 to 82.47 GLM, MLM, CMLM, SUPER, MLMM, FarmCPU, Blink All
  Kukri_c18009_398a 3B 67.67 0.95 78.20 to 80.15 GLM, MLM, CMLM, SUPER Combined
  wsnp_Ex_c5378_9505533 3B 68.71 0.94 NA SUPER Combined
SLUfhbchr3D.5a RFL_Contig4591_1759 3D 0.00 0.94 51.94 to 54.69* MLMM; (GLM, MLM, CLM, SUPER, Blink)* Combined
  RAC875_rep_c115090_5 3D 0.00 0.02 NA Blink Breeding
SLUfhbchr3D.5b JD_c7714_954 3D 143.01 0.04 NA Blink, SUPER Genebank
SLUfhbchr5A.6 RAC875_rep_c106118_339 5A 39.02 0.03 -31.55 to -29.40 GLM, MLM, SUPER, MLMM Combined
SLUfhbch6A.7 Tdurum_contig46670_911 6A 128.26 0.96 NA SUPER Combined
SLUfhbchr7A.8 Kukri_c11530_92 7A 232.11 0.84 44.1 CMLM, SUPER, MLMM Combined
  RAC875_c12733_1509a 7A 228.37 0.83 40.41 to 45.14 GLM, MLM, CMLM, SUPER, MLMM, FarmCPU, Blink Combined
SLUfhbchr7B.9 wsnp_Ex_c351_689415 7B 143.23 0.02 NA Blink, SUPER Breeding
  RAC875_c8752_1079 7B 158.98 0.84 39.97* SUPER; (CMLM)* Combined