Quantitative trait loci (QTL) detected in genome-wide association studies employing seven models at p = 0.0001 (LOD ≥ 4) for Fusarium head blight severity in winter wheat from the breeding, genebank, and combined sets (Zakieh et al., 2021). Chr., chromosome; FAF, favorable allele frequencies. The asterisk means also detected by these models at p = 0.0002. A, detected above Bonferroni corrected threshold (α = 0.05). B, the marker effects are estimated for only GLM, MLM, and CMLM and FarmCPU in GAPIT (Lipka et al., 2012).
QTL | Marker | Chr. | Position (cM) | FAF | Effect | Model(s) | Set |
---|---|---|---|---|---|---|---|
SLUfhbchr1B.1 | BS00021877_51 | 1B | 154.58 | 0.06 | NA | Blink | Combined |
SLUfhbchr2A.2 | BobWhite_c16923_64 | 2A | 125.33 | 0.06 | NA | Blink; (SUPER)* | Combined |
SLUfhbchr3A.3 | Kukri_rep_c89183_282 | 3A | 15.05 | 0.64 | 27.84 to 28.10 | GLM, CMLM | Combined |
SLUfhbchr3B.4 | wsnp_Ex_c34975_43204180 | 3B | 67.45 | 0.95(CS), 0.94 (BS), 0.97(GS) | 65.78 to 82.47 | GLM, MLM, CMLM, SUPER, MLMM, FarmCPU, Blink | All |
Kukri_c18009_398a | 3B | 67.67 | 0.95 | 78.20 to 80.15 | GLM, MLM, CMLM, SUPER | Combined | |
wsnp_Ex_c5378_9505533 | 3B | 68.71 | 0.94 | NA | SUPER | Combined | |
SLUfhbchr3D.5a | RFL_Contig4591_1759 | 3D | 0.00 | 0.94 | 51.94 to 54.69* | MLMM; (GLM, MLM, CLM, SUPER, Blink)* | Combined |
RAC875_rep_c115090_5 | 3D | 0.00 | 0.02 | NA | Blink | Breeding | |
SLUfhbchr3D.5b | JD_c7714_954 | 3D | 143.01 | 0.04 | NA | Blink, SUPER | Genebank |
SLUfhbchr5A.6 | RAC875_rep_c106118_339 | 5A | 39.02 | 0.03 | -31.55 to -29.40 | GLM, MLM, SUPER, MLMM | Combined |
SLUfhbch6A.7 | Tdurum_contig46670_911 | 6A | 128.26 | 0.96 | NA | SUPER | Combined |
SLUfhbchr7A.8 | Kukri_c11530_92 | 7A | 232.11 | 0.84 | 44.1 | CMLM, SUPER, MLMM | Combined |
RAC875_c12733_1509a | 7A | 228.37 | 0.83 | 40.41 to 45.14 | GLM, MLM, CMLM, SUPER, MLMM, FarmCPU, Blink | Combined | |
SLUfhbchr7B.9 | wsnp_Ex_c351_689415 | 7B | 143.23 | 0.02 | NA | Blink, SUPER | Breeding |
RAC875_c8752_1079 | 7B | 158.98 | 0.84 | 39.97* | SUPER; (CMLM)* | Combined |