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. 2022 Nov 1;13(11):924–931.e4. doi: 10.1016/j.cels.2022.10.005

Figure 3.

Figure 3

Higher baseline ISG expression observed in females in CHARM and in reference datasets

(A) The majority of ISGs are significantly different between sexes in baseline samples. A subset of ISGs that remain statistically significant after cell type correction is shown (see Table S3 for full list), colored by the sex with higher expression. An orange marker represents genes with higher expression in females and blue represents genes with higher expression among males. Point size is proportional to the log fold change of expression between sexes.

(B–D) (B) ISGs are more highly expressed in females in CHARM baseline samples and two independent studies, (C) Depression Genes and Networks (DGN) (n = 922), and (D) Netherlands Study of Depression and Anxiety (NESDA) (n = 1,848). Vertical bars represent ISG locations among gene lists sorted by log fold change between females and males. Fold enrichment is a measure of the observed versus expected number of ISGs present at each gene rank. p values are computed from rank-based enrichment.