Reagent/Resource	Reference or Source	Identifier or Catalog Number
Software
Numpy v1.23.2	Harris et al (2020)	N/A
Matplotlib v3.5.3	Hunter (2007)	N/A
Pandas v1.4.4	McKinney (2010)	N/A
Networkx v2.8.6	Hagberg et al (2008)	N/A
Scipy v1.9.9	Virtanen et al (2020)	N/A
Plotly v5.10.0	Plotly Technologies Inc (2015)	N/A
Scanpy v1.9.1	Wolf et al (2018)	N/A
scVelo v0.2.4	Bergen et al (2020)	N/A
BoolODE	Pratapa et al (2020)	N/A
Beeline	Pratapa et al (2020)	N/A