Table 5.
Characteristics of housekeeping genes in 21 B. subtilis strains.
Housekeeping gene | Length (bp) | No. of alleles | No. of polymorphic sites | dN/dS | Typing efficiency (TE) | Discriminatory power (DP) |
---|---|---|---|---|---|---|
adk | 654 | 11 | 78 | 0.4057 | 0.141 | 0.935 |
aroE | 843 | 18 | 322 | 0.3909 | 0.056 | 0.983 |
ccpA | 1005 | 16 | 269 | 0.4046 | 0.059 | 0.974 |
glpF | 828 | 17 | 247 | 0.4122 | 0.069 | 0.978 |
gmk | 615 | 15 | 136 | 0.4143 | 0.110 | 0.965 |
gyrA | 2466 | 17 | 718 | 0.4098 | 0.024 | 0.978 |
gyrB | 1917 | 17 | 532 | 0.4116 | 0.032 | 0.978 |
ilvD | 1677 | 18 | 458 | 0.4057 | 0.039 | 0.983 |
mutL | 1892 | 16 | 648 | 0.3972 | 0.025 | 0.970 |
pta | 972 | 15 | 232 | 0.3973 | 0.065 | 0.965 |
purH | 1539 | 17 | 428 | 0.4011 | 0.040 | 0.978 |
pycA | 3450 | 19 | 1075 | 0.3990 | 0.018 | 0.991 |
pyrE | 651 | 14 | 228 | 0.4015 | 0.061 | 0.961 |
rpoD | 1122 | 16 | 218 | 0.4300 | 0.073 | 0.974 |
spo0A | 804 | 16 | 187 | 0.4068 | 0.086 | 0.970 |
sucC | 1158 | 15 | 219 | 0.4048 | 0.068 | 0.965 |
tpiA | 762 | 16 | 114 | 0.3823 | 0.140 | 0.952 |