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. 2016 Jul 28;236:215–220. doi: 10.1016/j.jviromet.2016.07.024

Table 2.

Oligonucleotide primers and hybridization probes used in multiplex real-time PCR.

Virus Viral ORF Oligonucleotide name Oligonucleotide sequence
VARV B12R VARV_B12R_probe FAM-5′-CTGTCGGAGCCACAGTTTCGAGACG-3′-BHQ1
VARV_B12R_upper 5′-ATGTTCAAGCTGTTAATATCAATCTCG-3′
VARV_B12R_lower 5′-TTTGCCACTGAACCATTCTATCAT-3′



MPXV F3L MPXV_F3L_probe JOE-5′-TGTAGGCCGTGTATCAGCATCCATT-3′-BHQ1
MPXV_F3L_upper 5′-CATCTATTATAGCATCAGCATCAGA-3′
MPXV_F3L_lower 5′-GATACTCCTCCTCGTTGGTCTAC-3′



VZV ORF38 VZV_ORF38_probe TAMRA-5′-ACAATGAGTAGTGGCTTTATGGCGAG-3′-BHQ2
VZV_ORF38_upper 5′-AAACCGCACATGATAACGC-3′
VZV_ORF38_lower 5′-GATTAGGACCATCCCCCG-3′



IC IC_probe Cy5-5′-TTGCTTGTCGTGCTCGTATCGTCC-3′-BHQ3