Table I.
Reference | Sample number/patient information | Method/dataset/GEO | Main results |
---|---|---|---|
Enquobahrie et al. (2008) |
|
Microarray (Operon’s Human Genome Array Ready Oligo Set™ version 2.1) and qPCR. | 58 genes (56 up- and 2 downregulated) were differentially expressed in PE placentas, including upregulated BCL6, with a fold change of 1.78 (P = 0.0154). |
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Winn et al. (2009) |
|
Microarray platform high-density HG-U133A and HGU133B GeneChips (Affymetrix, Santa Clara, CA); GEO accession number: GSE14722. | 55 genes were differentially expressed in PE placentas, including upregulated BCL6, with a fold change of 1.69. |
| |||
Sitras et al. (2009) |
|
30 K Human Genome Survey Microarray v.2.0 (Applied Biosystems); GEO accession number: GSE10588. | 213 genes were significantly upregulated in severe PE placentas, including BCL6, with a fold change of 2.2 (P = 0.01). 82 genes were downregulated. 168 genes were differentially expressed between EO- versus LO-PE placentas, suggesting differences in pathophysiology. |
| |||
Nishizawa et al. (2011) |
|
Microarray experiments with Affymetrix GeneChip system (Affymetrix, Santa Clara, CA, USA). GEO accession number: GSE24129. | 62 genes were differentially expressed in both PE and FGR. TP53-downstream apoptosis-related genes, such as BCL6 and BAX, were found to be more highly upregulated in PE- than in FGR placentas. BCL6 was upregulated in PE placentas with a fold change of 2.02 (P = 0.0024). |
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Xiang et al. (2013) |
|
Microarray experiments with Roche Nimblegen Gene Expression 126135 K Arrays. GEO accession number: GSE43942. | 1312 genes were differentially expressed in PE placentas, including upregulated BCL6 (fold change 2.51, P = 0.0026; Supplementary Table S2). |
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Trifonova et al. (2014) |
|
HT-12 BeadChip microarrays (Illumina, USA). | 63 genes were differentially expressed in PE placentas (50 up- and 13 downregulated). BCL6 was upregulated with a fold change of 2.36 (P = 0.0006). |
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Louwen et al. (2014) |
|
Self-designed TaqMan gene array, Applied Biosystems (Darmstadt, Germany); qPCR verification. | BCL6 gene was upregulated in LO-PE with a fold change of 1.47 (P = 0.087). Increased BCL6 may be involved in deregulated cell cycle regulation, survival, and differentiation processes of villous trophoblasts in pre-eclamptic placentas. |
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Sober et al. (2015) |
|
Library preparation with Nextera™ Technology (Illumina) total RNA sequencing was performed on Illumina HiSeq2000. | 199 and 98 genes were differentially expressed in PE without IUGR and PE with IUGR, respectively. BCL6 was in the top-gene list and upregulated in LO-PE with IUGR (log2 fold change 0.77, P = 0.00081, Supplementary Data S3). |
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Than et al. (2018) |
|
Whole-Human Genome Oligo Microarray G4112A (Agilent Technologies, Santa Clara, CA); GEO accession numbers GSE65866, GSE65940, and GSE66273. | BCL6 upregulation sensitized trophoblasts to ischemia and repressed differentiation (log fold change 1.86, absolute fold change 3.64, P = 0.00065; Supplementary Data S1). BCL6 was highly expressed in preterm but not in term PE placentas, suggesting its potential role only in the pathology of preterm cases. |
Guo et al. (2021) |
|
The study performed a deeply re-analyzing of publicly available datasets (Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)). | 1016 genes were differentially expressed in severe EO-PE. Severe LO-PE showed a deregulation of 133 genes. The comparison between EO-PE versus LO-PE identified 226 differentially expressed genes. BCL6 was upregulated only in EO-PE with a log fold change of 1.603 (P = 0.00026). |
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Ren et al. (2021) |
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TruSeq RNA Kit (Illumina) followed by paired-end sequencing using Illumina Hiseq 2500. | 2977 genes, which are enriched with metabolism-related pathways and transporter functions, were differentially expressed in severe EO-PE, whereas 375 genes, which are enriched with immune-related pathways, were differentially expressed in severe LO-PE. BCL6 was upregulated in both EO- and LO-PE (log2 fold change 0.85, P = 1.51E−06; Supplementary Table S3). |
BCL6, B-cell lymphoma 6; CS, cesarean section; eCS, emergency cesarean section after the onset of labor; EO-PE, early-onset pre-eclampsia; FGR, fetal growth restriction; GEO, Gene Expression Omnibus; HELLP, Hemolysis, Elevated Liver enzymes and Low Platelets; IUGR, intrauterine growth restriction; LO-PE, late-onset pre-eclampsia; opVD, operative vaginal delivery; PE, pre-eclampsia; VD, vaginal delivery; wk, week.