Skip to main content
. 2022 Oct 20;78(Pt 11):1315–1336. doi: 10.1107/S2059798322009184

Table 1. Sample details.

  RNaseA Lysozyme Xylanase Urate oxidase Xylose isomerase
Organism Bos taurus (pancreas) Gallus gallus (hen egg white) Trichoderma reesei Aspergillus flavus Streptomyces rubiginosus
Source (catalogue No. or reference) Sigma–Aldrich R6513 Sigma–Aldrich L6876 or L4919 Hampton Research HR7-104 Sanofi–Aventis, Pichia pastoris expression Hampton Research HR7-102
Description: UniProt ID (sequence range in construct) P61823 (27–150) P00698 (19–147) F8W669 (1–190) Q00511 (2–302) with acetylated N-terminal Ser and 8-azaxanthine inhibitor: C4H3N5O2 P24300 (1–388)
Calculated extinction coefficient ɛ, A 280 0.1%
 From sequence 0.69 2.65 2.80 1.56 1.07
 8-Azaxanthine       0.28  
 Sequence + xanthine       1.84  
Calculated partial specific volume Inline graphic § (cm3 g−1, 20°C) 0.710 0.716 0.712 0.735 0.727
Mean protein and solvent scattering length densities (1010 cm−2) 12.621, 9.469 12.507, 9.484 12.518, 9.469 12.360, 9.489 12.363, 9.470
Mean scattering contrast (1010 cm−2) 3.151 3.023 3.049 2.871 2.893
Molecular mass from chemical composition (Da) 13690.3 (monomer) 14313.1 (monomer) 20843.6 (monomer) 34150.7 (protomer), 136603 (tetramer) 43227.4 (protomer), 172910 (tetramer)
Molecular mass from mass spectrometry†† (Da) 20825.0 34151.4 (protomer) 43227.6 (protomer)
Standard solvent composition 50 mM Tris pH 7.5, 100 mM NaCl 50 mM sodium citrate pH 4.5, 150 mM NaCl 50 mM Tris pH 7.5, 100 mM NaCl 100 mM Tris pH 8.0, 150 mM NaCl 50 mM Tris pH 7.5, 100 mM NaCl, 1 mM MgCl2

Calculated using ProtParam (Gasteiger et al., 2005).

Experimentally determined.

§

Calculated using SEDNTERP (Philo, 1997); see also Section S2 and Supplementary Table S2.

Calculated using MULCh (Whitten et al., 2008).

††

Performed at Sydney Mass Spectrometry. Note: urate oxidase shows a second resolved peak at 34 169 Da.