Table 1. Sample details.
RNaseA | Lysozyme | Xylanase | Urate oxidase | Xylose isomerase | |
---|---|---|---|---|---|
Organism | Bos taurus (pancreas) | Gallus gallus (hen egg white) | Trichoderma reesei | Aspergillus flavus | Streptomyces rubiginosus |
Source (catalogue No. or reference) | Sigma–Aldrich R6513 | Sigma–Aldrich L6876 or L4919 | Hampton Research HR7-104 | Sanofi–Aventis, Pichia pastoris expression | Hampton Research HR7-102 |
Description: UniProt ID (sequence range in construct) | P61823 (27–150) | P00698 (19–147) | F8W669 (1–190) | Q00511 (2–302) with acetylated N-terminal Ser and 8-azaxanthine inhibitor: C4H3N5O2 | P24300 (1–388) |
Calculated extinction coefficient ɛ, A 280 0.1% | |||||
From sequence† | 0.69 | 2.65 | 2.80 | 1.56 | 1.07 |
8-Azaxanthine‡ | 0.28 | ||||
Sequence + xanthine | 1.84 | ||||
Calculated partial specific volume § (cm3 g−1, 20°C) | 0.710 | 0.716 | 0.712 | 0.735 | 0.727 |
Mean protein and solvent scattering length densities¶ (1010 cm−2) | 12.621, 9.469 | 12.507, 9.484 | 12.518, 9.469 | 12.360, 9.489 | 12.363, 9.470 |
Mean scattering contrast¶ (1010 cm−2) | 3.151 | 3.023 | 3.049 | 2.871 | 2.893 |
Molecular mass from chemical composition† (Da) | 13690.3 (monomer) | 14313.1 (monomer) | 20843.6 (monomer) | 34150.7 (protomer), 136603 (tetramer) | 43227.4 (protomer), 172910 (tetramer) |
Molecular mass from mass spectrometry†† (Da) | — | — | 20825.0 | 34151.4 (protomer) | 43227.6 (protomer) |
Standard solvent composition | 50 mM Tris pH 7.5, 100 mM NaCl | 50 mM sodium citrate pH 4.5, 150 mM NaCl | 50 mM Tris pH 7.5, 100 mM NaCl | 100 mM Tris pH 8.0, 150 mM NaCl | 50 mM Tris pH 7.5, 100 mM NaCl, 1 mM MgCl2 |
Calculated using ProtParam (Gasteiger et al., 2005 ▸).
Experimentally determined.
Calculated using SEDNTERP (Philo, 1997 ▸); see also Section S2 and Supplementary Table S2.
Calculated using MULCh (Whitten et al., 2008 ▸).
Performed at Sydney Mass Spectrometry. Note: urate oxidase shows a second resolved peak at 34 169 Da.