Table 1. Test structures and models.
The r.m.s.d. was calculated with SUPERPOSE (Krissinel & Henrick, 2004 ▸). ASU, asymmetric unit.
| Structure | Space group | Solvent content (%) | No. of residues | % α | % β | Chains in ASU | Resolution (Å) | Model generation | R.m.s.d. (Å)(No. of residues aligned) | pLDDT or error estimate |
|---|---|---|---|---|---|---|---|---|---|---|
| PDB entry 5ohu | P63 | 60 | 642 | 78 | 13 | 1 | 2.2 | AlphaFold Colab DeepMind | 1.4 (597) | 95.1 |
| AMIA (PDB entry 8a42) | P212121 | 46 | 638 | 57 | 34 | 1 | 1.2 | AlphaFold local workstation | 2.2 (603) | 96.2 |
| GLYAT | P212121 | 40 | 295 | 50 | 38 | 2 | 1.35 | AlphaFold Colab MMseqs2 | 0.7 (290) | 90.2 |
| TsaR (PDB entry 3fxq) | C2 | 54 | 305 | 57 | 36 | 2 | 1.85 | AlphaFold local workstation | 0.9 (291) | 91.9 |
| HheD2 (PDB entry 7b73) | P212121 | 52 | 243 | 57 | 32 | 4 | 1.6 | RoseTTAFold online server | 1.0 (224) | 1.8 |
| PDB entry 7vse | P2221 | 44 | 155 | 45 | 44 | 2 | 2.08 | AlphaFold Colab MMseqs2 | 1.0 (149) | 94.5 |
| PDB entry 7q6t | P6522 | 70 | 130 | 82 | 13 | 1 | 2.05 | AlphaFold Colab MMseqs2 | 0.5 (130) | 97.8 |
| PDB entry 7syc | P6122 | 61 | 141 | 34 | 57 | 1 | 2.0 | AlphaFold Colab MMseqs2 | 0.5 (120) | 89.5 |
| PDB entry 7vo4 | P21 | 48 | 286 | 55 | 35 | 2 | 2.1 | AlphaFold Colab MMseqs2 | 0.7 (239) | 90.3 |
| AtzR (PDB entry 7z7j) | P41212 | 53 | 600 | 56 | 33 | 2 | 1.8 | AlphaFold local workstation | 4.7 (277) | 92.0 |