Skip to main content
. 2022 Oct 19;11:e77974. doi: 10.7554/eLife.77974

Figure 5. Analysis of the phagocytic capacities of each macrophage subgroup.

(A) Phagocytic activity was measured for mouse skeletal muscle (SKM) macrophages at 4°C (control, low phagocytosis) and 37°C (active phagocytosis, right boxes). Phagocytic capacity was divided into groups that were negative (Neg; intensity <103), low (Lo; 103–104), medium (Med; 104–105), and high (Hi; >105), depending on signal intensities. Gating was established using fluorescence minus one (FMO) controls for each experiment. (B) Quantification of the macrophages showing active phagocytosis (Lo + Med + Hi) in the four subgroups. (C) Signal intensities of macrophages in each capacity group (Lo, Med, and Hi). (D) Quantification of number of active phagocytic macrophages in each subgroup of the three intensity groups. Data are representative of three independent experiments.

Figure 5.

Figure 5—figure supplement 1. Efferocytotic capacities of four macrophage subgroups.

Figure 5—figure supplement 1.

(A) Efferocytosis assays to identify macrophages phagocytizing apoptotic cells. (B) Quantification of the efferocytosis activity of each macrophage subgroup.
Figure 5—figure supplement 2. Classification of LYVE1−/MHCIIlo subgroup by unsupervised clustering.

Figure 5—figure supplement 2.

(A) Unsupervised clustering revealed six subclusters (SubCl) in LYVE1−/MHCIIlo subgroup. (B) Gene ontology (GO) terms and associated genes in SubCl0.