Table 2.

Summary of abiotic stress-responsive genes in rice identified using transcriptomic approaches.

S. No.	Genes	Function	Associated stress response	Method of validation	References
1	OsMT1e-P	Metallothioneins	Drought and salinity stress	Microarray	Gautam et al. (2012)
2	OsUBCs	Ubiquitin- conjugating enzymes	Salt and drought stress	EST, Microarray	Zhiguo et al. (2015)
3	OsHsfA3	Heat shock factor	Heat stress	EST, Microarray	Chauhan et al. (2011)
	OsHsfA7
	OsHsfA9
	OsHsfA1
4	Os01g47050, Os01g59690, Os02g15950, Os02g51350, Os04g33820, Os05g43490, Os06g39370, Os07g09710, Os10g30280	F-box proteins	Osmotic stress	EST, Microarray	Jain et al. (2007)
5	OsABCG26	Half-ABC proteins	Cold stress	EST	Matsuda et al. (2012)
	OsABCG27		Salt stress
6	OsDhn1	Dehydrins	Drought stress	EST	Lee et al. (2005)
7	Os02g47744, Os12g41920 Os06g19980	MYB transcription factors	Drought stress	EST, Microarray	Katiyar et al. (2012)
8	OsZFP177, OsZFP181, OsZFP176	A20/AN1-type zinc finger protein	Drought, cold, and osmotic stress	EST, Microarray	Huang et al. (2008)
	OsZFP173
	OsZFP181
	OsZFP176
	OsZFP157
9	OsDHOD1	Dihydroorotate dehydrogenase	Salt, drought	EST, Microarray	Liu et al. (2009)
10	OsSAP16	Stress- associated protein	Drought stress	RNA-Seq	Lei et al. (2020)
11	OsHPPD	Vitamin E biosynthetic enzymes	Dehydration, cold, and salt stress	EST, Microarray	Chaudhary and Khurana (2009)
	OsyTMT
	OsHPT
	OsMPBQ MT2
12	Osnadp-me2	C4 photosynthetic enzymes	Salt and drought stress	EST, Microarray	Muthusamy et al. (2019)
	Osnadp-me3
13	OsSIPP2C1	Protein phosphatase 2C	Salt and drought stress	EST, Microarray	Li et al. (2013)
14	OsFKBP20	SUMO-	Heat stress	EST	Zhang et al. (2018)
	OsSce1	conjugating enzyme and peptidyl prolyl cis-trans isomerase
15	OsGLYI6, OsGLYI11	Glyoxalase enzymes	Drought stress	EST, Microarray	Mustafiz et al. (2011)
16	OsM4	Meprin and TRAF homology (MATH) domain- containing protein	Salinity and drought	Microarray	Kushwaha et al. (2016)
	OsMB11
17	OsPP2C	Protein phosphatase	Salt, cold, and drought	Microarray and Q-PCR	Singh et al. (2010)
	OsPP2A
18	OsMADS4, OsMADS5, OsMADS6, OsMADS7, OsMADS15	Transcription factors	Aerobic adaptation	RNA-Seq	Phule et al. (2019)
19	OsSWEET3A	Sugar transporters	Aerobic adaptation	RNA-Seq	Phule et al. (2019)
20	OsLEA3	Late embryogenesis abundant proteins	Drought stress	RNA-Seq	Mangrauthia et al. (2016)
	OsDREB1A	Dehydration- responsive element binding
	OsRAB16B	Responsive to ABA
22	OsPRX	Peroxidase precursor	Cold stress	RNA-Seq	Dametto et al. (2015)
	OsKET	3-Ketoacyl-CoA synthase
	OsAQU	Aquaporin protein
	OsCSLE1	Cellulose synthase-like family E
	OsCDKB2;1	Cyclin- dependent kinase B2-1
21	OsSulfT2.1, OsPotT2	Sulfate transporter	Fluoride susceptibility	RNA-Seq	Banerjee et al. (2020)
		Potassium transporter
22	OsMYB-R1	Transcription factor	Drought stress	RNA-Seq	Tiwari et al. (2020)
23	OsPhyB	Phytochrome B	Drought stress	RNA-Seq	Yoo et al. (2017)
24	OsSweet11	Sugar transporter	Fluoride tolerance	RNA-Seq	Banerjee et al. (2020)