TABLE 3.
Docking outcomes of major compounds in the NS essential oil against the human pancreatic α-amylase protein.
Compound | Binding energy (kcal/mol) | Involved receptor residues | Type of interactions |
---|---|---|---|
α-Phellandrene | −5.9 | Tyr62, His299, Asp197, Asp300, Arg195, Trp58, Trp59, Leu165 | Pi-Sigma, Pi-Pi stacked, VDW |
β-Cymene | −5.8 | Tyr62, His299, Trp58, Asp197, Asp300, Ala198, His101, Trp59, Leu165 | Pi-Sigma, Pi-Alkyl, Pi-Pi stacked, VDW |
4-Caranol | −5.9 | Asp197, Tyr62, His299, Trp58, Trp59, Asp300, Arg195, Ala198, His101, Leu165 | HB, Pi-Sigma, Pi-Alkyl, VDW |
Thymol | −6.0 | Tyr62, His299, Asp197, Trp58, Trp59, Asp300, Arg195, His101, Leu165 | Pi-Sigma, Pi-Alkyl, Pi-Pi stacked, VDW |
α-Pinene | −5.6 | Tyr62, His299, Trp58, Trp59, Asp300, His101, Leu165 | Pi-Sigma, Pi-Alkyl, VDW |
β-Pinene | −5.5 | Tyr62, His299, Trp58, Trp59, Asp300, Asp197, His101, Leu165 | Pi-Sigma, Pi-Alkyl, VDW |
Acarbose | −8.2 | Asp300, Arg195, Glu233, Asp353, Asp356, His305, Thr163, Tyr62, His101, His299, Ile235, Asn352, Asp197, Ala198, Leu162, Leu165, Trp58, Trp59, Trp357, Val98, Val354, Ile235 | HB, VDW |
Abbreviation: HB, Hydrogen Bond; VDW, Van der Waals forces.