Table 1.
List of top KEGG pathways associated with DEGs in various groups and number of up and downregulated genes in various comparison groups.
| Pathway ID | Description | R_I vs. R_CK | S_I vs. S_CK | R_CK vs. S_CK | R_I vs. S_I | ||||
|---|---|---|---|---|---|---|---|---|---|
| Up | Dn | Up | Dn | Up | Dn | Up | Dn | ||
| ko04075 | Plant hormone signal transduction | 28 | 23 | 24 | 13 | 13 | 9 | 8 | 7 |
| ko00940 | Phenylpropanoid biosynthesis | 41 | 15 | 15 | 10 | 16 | 21 | 27 | 10 |
| ko00360 | Phenylalanine metabolism | 19 | 3 | 4 | 2 | 4 | 8 | 11 | 5 |
| ko00480 | Glutathione metabolism | 19 | 1 | 6 | 3 | 1 | 6 | 6 | 2 |
| ko00500 | Starch and sucrose metabolism | 24 | 20 | 20 | 5 | 9 | 10 | 4 | 11 |
| ko04110 | Cell cycle | 13 | 8 | 16 | 0 | 14 | 0 | 1 | 0 |
| ko00592 | alpha-Linolenic acid metabolism | 11 | 5 | 8 | 1 | 2 | 4 | 4 | 0 |
| ko00250 | Alanine, aspartate and glutamate metabolism | 9 | 3 | 2 | 3 | 0 | 4 | 1 | 2 |
| ko04540 | Gap junction | 1 | 5 | 0 | 2 | 0 | 0 | 0 | 0 |
| ko04113 | Meiosis - yeast | 10 | 4 | 10 | 1 | 6 | 1 | 1 | 1 |
| ko03030 | DNA replication | 11 | 0 | 8 | 0 | 0 | 0 | 1 | 0 |
| ko00040 | Pentose and glucuronate interconversions | 7 | 12 | 4 | 5 | 6 | 3 | 2 | 3 |
| ko00220 | Arginine biosynthesis | 9 | 4 | 1 | 3 | 2 | 3 | 1 | 3 |
| ko00903 | Limonene and pinene degradation | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ko00982 | Drug metabolism - cytochrome P450 | 14 | 2 | 3 | 2 | 0 | 4 | 7 | 2 |
| ko00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | 7 | 0 | 1 | 1 | 0 | 3 | 1 | 2 |
| % DEGs | 67.976 | 32.024 | 70.5 | 29.48 | 48.667 | 51.333 | 60.976 | 39.024 | |
| Total DEGs | 225 | 106 | 122 | 51 | 73 | 77 | 75 | 48 | |
Upregulated (up) and down-regulated (dn).