Skip to main content
. Author manuscript; available in PMC: 2023 May 1.
Published in final edited form as: Nat Protoc. 2022 Aug 17;17(11):2699–2719. doi: 10.1038/s41596-022-00733-3

Table 4.

Primers

Gene Forward primer Reverse primer

BARX1 CCAGTGGGAACTTGAACACC CTGAAGTTCGGCGTGCAG
COL1A1 GACGAAGACATCCCACCAATCA GGACTCGTCACAGATCACGTC
CYP26A1 GCTGCCTCTCTAACCTGCAC TGCTTTAGTGCCTGCATGTC
DES AATGACCGCTTCGCCAACTA GGTTAGTGAGCACCTCCACC
FOXA2 GGGAGCGGTGAAGATGGA TCATGTTGCTCACGGAGGAGTA
FOXF1 AGCAGCCGTATCTGCACCAGAA CTCCTTTCGGTCACACATGCTG
GATA4 TAGCCCCACAGTTGACACAC GTCCTGCACAGCCTGCC
GLI1 GGGATGATCCCACATCCTCAGTC CTGGAGCAGCCCCCCCAGT
HAND2 CACTTCTGAATTCGCCCAC TCTCTTTGACCCCCTTTGAG
HOXA5 CGCCCAACCCCAGATCTAC CGGGCCGCCTATGTTGT
ISL1 AGATTATATCAGGTTGTACGGGATCA ACACAGCGGAAACACTCGAT
KRT19 CACCAGCCGGACTGAAGAAT GCAGGTCAGTAACCTCGGAC
LHX2 TCGGGACTTGGTTTATCACCT GCAAGCGGCAGTAGACCAG
MSC TATGAGAACGGCTACGTGCAC AGTCCGATTTAAGCGGTGGTT
MSX1 CTCCGCAAACACAAGACGAAC GGCGGTTCTGGAACCATATCT
MSX2 CGCCAAGACATATGAGCCCT GTTCTGCCTCCTGCAGTCTT
NKX2–5 TGGAGAAGACAGAGGCGGACAA ATAGACCTGCGCCTGCGAGAA
NKX3–2 CAACACCGTCGTCCTCG CCGCTTCCAAAGACCTAGAG
NKX6–1 ATGACAGAGAGTCAGGTCAAGG CTCCGAGTCCTGCTTCTTCTT
OCT3/4 TGAGAGGCAACCTGGAGAATT TTTCTTTCCCTAGCTCCTCCC
PITX1 TTCTTGGCTGGGTCGTCT TCGTCTGACACGGAGCTG
PTCH1 CCACAGAAGCGCTCCTACA CTGTAATTTCGCCCCTTCC
SOX2 GCTTAGCCTCGTCGATGAAC AACCCCAAGATGCACAACTC
SOX9 GTAATCCGGGTGGTCCTTCT GTACCCGCACTTGCACAAC
TBX4 TGATCATCACTAAGGCTGGCAG ACAGAACTTGTAGCGATGGTCAT
TBX5 ACAAAGTGAAGGTGACGGGCCTTA ATCTGTGATCGTCGGCAGGTACAA
TBX18 TTAACCTTGTCCGTCTGCCTGAGT GTAATGGGCTTTGGCCTTTGCACT
TBX20 GGCGACGGAGAACACAATCAA CTGGGCACAGGACGACTTC
TBXT CAGTGGCAGTCTCAGGTTAAGAAGGA CGCTACTGCAGGTGTGAGCAA
UPK1B TGGAAGCAACGAACAGTTGA CTACCGTGTGCGCAGAAA
UPK3B ATACCGTCTGGCTCGTGGTG CAGGGGCAGCGTCATGTAGT
VIM ATTCCACTTTGCGTTCAAGG CTTCAGAGAGAGGAAGCCGA
WNT2 CTGTATCAGGGACCGAGAGG CCCACAGCACATGACTTCAC
WT1 ATAGGCCAGGGCATGTGTATGTGT AGTTGCCTGGCAGAACTACATCCT