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. Author manuscript; available in PMC: 2023 May 1.
Published in final edited form as: Nat Protoc. 2022 Aug 17;17(11):2699–2719. doi: 10.1038/s41596-022-00733-3

Table 5.

Troubleshooting table

Step Problem Possible reason Solution

6 Not enough dissociation of cells Cell density is too high Start experiment with a lower density of hPSCs.
Not enough agitation of cells Tap side of the plate.
17 Low cell density Low concentration of plated cells Check plating cell density.
Low attachment of the plated cells Check thiazovivin concentration and expiry date.
Check protein concentration and expiry data of Geltrex.
Poor growth of the cells Check the quality of hPSCs.New line of hPSCs should be thawed.
34 Poor differentiation of hPSCs to SpM Cell density is too high Check plated cell density and cell confluency at each process.
Check cell distribution in the wells.
Cells should be evenly distributed.

Poor induction of pFG-SpM and aFG-SpM Cell density is too high Check plated cell density and cell confluency at each process.
Check cell distribution in the wells.
Cells should be evenly distributed.
RA might be degraded by light Use fresh and photo-protected RA.
38 Cells lift off the plate Cell density is too high Check plated cell density and cell confluency at each process.
Check cell distribution in the wells.
Cells should be evenly distributed.
Poor differentiation of hPSCs to organ-specific mesoderm Cell density is too high Check plated cell density and cell confluency at each process.
Check cell distribution in the wells.
Cells should be evenly distributed.