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. 2022 Oct 21;13:967021. doi: 10.3389/fmicb.2022.967021

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Copyright © 2022 Valenzuela, Norambuena, Morgante, García, Jiménez, Núñez, Fuentes and Pollak.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Diagnosis on field samples from the shoot development stage using Pavium panel-II. HTS data from field samples (SD-L1, SD-L2, SD-S1, and SD-S2) were submitted to the pipeline using the Pavium panel-II. X-axis: VGAC scale (0–1); ordinate: abbreviated name of viruses; dotted lines: VGAC cutoffs at 0.1 and 0.3; filled bars: replicase identified. Supplementary Figure 7 depicts these data together with read assignment levels. SD, shoot development stage; VGAC, viral genome assembly coverage; ACLSV, apple chlorotic leaf spot virus; ApMV, apple mosaic virus; CGRMV, cherry green ring mottle virus; CNRMV, cherry necrotic rusty mottle virus; CVA, cherry virus A; LChV-1, little cherry virus 1; LChV-2, little cherry virus 2; PBNSPaV, plum bark necrosis stem pitting associated virus; PDV, prune dwarf virus; PNRSV, prunus necrotic ringspot virus; PPV, plum pox virus.