REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit anti-calretinin (diluted 1:1000) | Swant | Cat: CR7699/3H; RRID: AB 10000321 |
Chicken anti-GFP (diluted 1:3000) | Aves Labs | Cat: GFP-1020; RRID: AB_10000240 |
Goat anti-Prox1 (diluted 1:300) | R&D systems | Cat: AF2727; RRID: AB_2170716 |
Mouse anti-Reelin (CR-50, diluted 1:300) | MBL International | Cat: D223-3; RRID: AB_843523 |
Goat anti mCherry (diluted in 1:125) | Antibodies-online | Cat: ABIN1440057; RRID: AB_2333093 |
Rat anti-RFP (diluted 1:500) | ChromoTek | Cat: 5f8-100; RRID: AB_2336064 |
Alexa Fluor 647 Streptavidin (diluted 1:500) | Jackson ImmunoResearch Labs | Cat: 016-600-084; RRID: AB_2341101 |
Donkey anti-goat IgG (HL) Alexa Fluor 488 (diluted 1:500) | Molecular Probes | Cat: A-11055; RRID: AB_2534102 |
Anti-chicken IgG (H + L) Alexa Fluor 488 (diluted 1:500) | Jackson ImmunoResearch Labs | Cat: 703-545-155; RRID: AB_2340375 |
Donkey anti-rat IgG (H + L) Cy3 (diluted 1:500) | Jackson ImmunoResearch Labs | Cat: 712-165-150; RRID: AB_2340666 |
Donkey anti-mouse IgG (H + L) Alexa Fluor 647 (diluted 1:500) | Molecular Probes | Cat: A-31571; RRID: AB_162542 |
Donkey anti-rabbit IgG (H + L) AlexaFluor 647 (diluted 1:500) | Molecular Probes | Cat: A-31573; RRID: AB_2536183 |
Rabbit anti-calretinin (diluted 1:1000) | Swant | Cat: CR7699/3H; RRID: AB_10000321 |
Chicken anti-GFP (diluted 1:3000) | Aves Labs | Cat: GFP-1020; RRID: AB_10000240 |
Goat anti-Prox1 (diluted 1:300) | R&D systems | Cat: AF2727; RRID: AB_2170716 |
Bacterial and virus strains | ||
AAV-hSyn-DIO-hM3Dq-mCherry (AAV8) | Krashes et al., (2011), Addgene | Cat: 44361 |
AAV-hSyn-DIO-hM4Di-mCherry (AAV8) | Krashes et al., (2011), Addgene | Cat: 44362 |
AAV-hSyn-GFP-Cre (AAV8) | UNC Vector Core | N/A |
AAV-EF1a-DIO-shSlc18A2-mCerulean (AAV8) | This paper | N/A |
AAV-EF1a-DIO-shLacZ-mCerulean (AAV8) | This paper | N/A |
pCAG-DiO-mCerulean-WPRE | This paper | N/A |
pAAV-EF1a-DiO-mCherry | A gift from Karl Deisseroth, Addgene | Cat: 20299 |
Chemicals, peptides, and recombinant proteins | ||
Clozapine-N-Oxide | Tocris | Cat:4936-10MG |
Fluoxetine hydrochloride | Sigma-Aldrich | Cat: F132-10MG |
Serotonin hydrochloride | Sigma-Aldrich | Cat: H9523-25MG |
CNQX | Tocris | Cat: 0190 |
DL-2-Amino-5-Phosphonovaleric acid (AP-V) | Sigma-Aldrich | Cat: A5282-50MG |
Picrotoxin (PTX) | Tocris | Cat: 1128 |
Bovine serum albumin (BSA) | Sigma-Aldrich | Cat: A8806 |
Normal donkey serum | Sigma-Aldrich | Cat: S30-100ML |
4',6-Diamidine-2’-phenylindole dihydrochloride (DAPI) | Sigma-Aldrich | Cat: D9542 |
Fast Green | Roche | Cat: 06402712001 |
Isoflurane 100% inhalation vapor liquid | Piramal Critical Care Limited | N/A |
Paraformaldehyde | Sigma-Aldrich | Cat: 441244 |
Pentobarbital sodium (Euthatal) | Merial Animal Health Ltd | N/A |
Triton X-100 | Sigma-Aldrich | Cat: T8787-100ML |
0.9% NaCl | Sigma-Aldrich | Cat: S76530 |
Dulbecco's Modified Eagle Medium | Gibco | Cat: 21969-035 |
Penicillin/Streptomycin | Gibco | Cat: 15140-122 |
Critical commercial assays | ||
ACDBio Multiplex Fluorescent Kit v2 | ACDBio | Cat: 323110 |
Experimental Models: Cell lines | ||
HEK293FT | ThermoScientific | Cat: R70007 |
Experimental Models: Organisms/strains | ||
Mice: NexCre/+ | Gift from K.A. Nave | MGI: 2668659 |
Mice: Bak−/−;Baxfl/fl | The Jackson Laboratory | JAX: 006329; RRID: IMSR_JAX:006329 |
Mice: Htr3a-Cre | Gensat | Cat: 037089-UCD RRID: MMRRC 037089-UCD |
Mice: VipCre/+ | The Jackson Laboratory | Cat: 010908; RRID: IMSR JAX:010908 |
Mice: RCLtdT/+ | The Jackson Laboratory | JAX: 007909; RRID: IMSR_JAX:007909 |
Mice: CD1 | Charles River | Crl: CD1(ICR) |
Mice: Slc17a7-/- (Vglut1-/-) | Fremeau et al., 2004 | MGI: 3617803 |
Mice: Slc17a6fl/fl (Vglut2fl/fl) | Hnasko et al. (2010) | MGI: 4879093 |
Mice: Fucci2fl/fl | Mort et al. (2014) | MGI: 5645798 |
Oligonucleotides | ||
FW primer for shSlc18a2 | CTAGGCAAGCTGATCCTGTTCAT CGCCTGACCCACGATGAACAGG ATCAGCTTGCTTTTTG |
|
RV primer for shSlc18a2 | AATTCAAAAAGCAAGCTGATCCT GTTCATCGTGGGTCAGGCGATG AACAGGATCAGCTTGC |
|
RNAScope® Probe-Mm-Slc18a2 | ACDBio | Cat: 425331 |
RNAScope® Probe-MmSlc6A4 | ACDBio | Cat: 315851 |
Software and algorithms | ||
FIJI (ImageJ) | National Institute of Health | https://fiji.sc/; https://imagej.nih.gov/ij/index.html; RRID: SCR_003070 |
MATLAB | MathWorks | https://www.mathworks.com/products/matlab.html; RRID: SCR_001622 |
LAS AF | Leica Microsystems | https://www.leica-microsystems.com/; RRID: SCR_013673 |
Stereo Investigator | MBF Biosciences | https://www.mbfbioscience.com/stereo-investigator; RRID: SCR_018948 |
Other | ||
P-2000 micropipette puller | Sutter Instrument | https://www.leicabiosystems.com/histology-equipment/microtomes/ |
ZEISS Apotome 2 | ZEISS | https://www.zeiss.com/microscopy |
Leica TCS-SP8 confocal | Leica | https://www.leica-microsystems.com/ |
LightCycler® 96 | Roche Life Science | N/A |
Optima-L100 XP | Beckman-Coulter | N/A |