Table 1.

Signatures and features used by Duet

Supporting read signature
HP	Haplotype
PC	Confidence score of the haplotype prediction
VC	Count of SV marks

Feature for SV phasing
pSV = ΣVC>0/ΣVC ≥ 0	Proportion of reads with SV marks
pHP = ΣVC,HP>0/ΣVC>0	Proportion of phasable reads with SV marks
ΣPC = ΣVC*PC per HP	Total PC for read set from each haplotype
μPC = μVC*PC per HP	Average PC for read set from each haplotype
pΣPC = ΣPC1/ΣPC2	Ratio of ΣPC for both haplotype