Table 1.
Evaluation of local baseEvaluation of local base-pairing interaction energies with nuclear hormone receptor superfamily of ligandactivated transcription factors and X-linked inhibitor of apoptosis protein genes
| lncRNA | Number of local base-pairing interactions predicted by RIblast (NR3C1) | Total of local base-pairing interaction energies with NR3C1 gene (kcal/mol) | Number of local base-pairing interactions predicted by RIblast (XIAP) | Total of local base-pairing interaction energies with XIAP gene (kcal/mol) |
|---|---|---|---|---|
| ANRIL | No interaction | No interaction | No interaction | No interaction |
| B3GALT5-AS1 | No interaction | No interaction | −21.47 | 1 |
| CCAT1 | −33.12 | 2 | −36.9 | 2 |
| circ_0079662 | No interaction | No interaction | No interaction | No interaction |
| circACAP2 | No interaction | No interaction | No interaction | No interaction |
| CYTOR | No interaction | No interaction | No interaction | No interaction |
| DACOR1 | No interaction | No interaction | No interaction | No interaction |
| FER1L4 | No interaction | No interaction | No interaction | No interaction |
| H19 | −122.8 | 6 | −33.62 | 2 |
| HNF1A-AS1 | −17.07 | 1 | −225.3 | 8 |
| HOTAIR | −16.95 | 1 | No interaction | No interaction |
| HULC | No interaction | No interaction | No interaction | No interaction |
| KCNQ1OT1 | −671.34 | 36 | −2228.15 | 84 |
| LEF1-AS1 | No interaction | No interaction | −540.91 | 15 |
| LINC-ROR | −37.78 | 2 | No interaction | No interaction |
| LINC00152 | No interaction | No interaction | No interaction | No interaction |
| LINC00662 | No interaction | No interaction | −499.31 | 13 |
| LINC00858 | No interaction | No interaction | No interaction | No interaction |
| LINC01234 | −35.3 | 2 | −170.7 | 7 |
| LNAPPCC | No interaction | No interaction | No interaction | No interaction |
| LOC285194 | No interaction | No interaction | No interaction | No interaction |
| MALAT1 | −16.74 | 1 | No interaction | No interaction |
| MBNL1-AS1 | −167.04 | 9 | −115.75 | 5 |
| NEAT1 | −52.12 | 3 | 89.77 | 5 |
| OIP5-AS1 | −18.71 | 1 | 1104.41 | 40 |
| PVT1 | No interaction | No interaction | −482.85 | 16 |
| SNHG16 | −33.66 | 2 | −763.3 | 28 |
| TUG1 | −16.51 | 1 | No interaction | No interaction |
| UCA1 | No interaction | No interaction | No interaction | No interaction |
| XIRP2-AS1 | No interaction | No interaction | No interaction | No interaction |
| XIST | −539.14 | 28 | −284.81 | 15 |
NR3C1=Nuclear hormone receptor superfamily of ligand-activated transcription factors; XIAP=X-linked inhibitor of apoptosis protein; lncRNA=Long noncoding RNAs