Table 4.
Predicted subcellular localization, transmembrane helix, signal peptide and non-classical secretory pathway in 10 common hypothetical proteins
| Name of protein | PSORTb | CELLO II | PSLpred | Gneg-mPLoc | TMHMM | HMMTOP | SignalP | SecretomeP |
|---|---|---|---|---|---|---|---|---|
| HP1 | Cytoplasmic | Cytoplasmic | Cytoplasmic | Cell inner membrane | No | No | No | No |
| HP2 | outer membrane | outer membrane | outer membrane | cell outer membrane | yes | yes | yes | no |
| HP3 | Outer membrane | Outer membrane | Outer membrane | Extracellular | No | No | Yes | Yes |
| HP4 | Cytoplasmic | Cytoplasmic | Cytoplasmic |
Cytoplasm Periplasm |
No | No | No | No |
| HP5 | Outer membrane | Outer membrane | Extracellular | Cell inner membrane | Yes | Yes | Yes | Yes |
| HP6 | Unknown |
Periplasmic Inner membrane |
Periplasmic | Cell inner membrane | Yes | Yes | No | No |
| HP7 | Unknown | Periplasmic | Periplasmic | Cell inner membrane | No | No | Yes | Yes |
| HP8 | Outer membrane | Outer membrane | Outer membrane | Cell outer membrane | No | No | Yes | Yes |
| HP9 | Unknown | Periplasmic | Periplasmic | Periplasm | Yes | Yes | Yes | Yes |
| HP10 | Unknown |
Periplasmic Cytoplasmic |
Outer membrane | Cell inner membrane | No | No | No | Yes |
Yes Transmembrane helix, signal peptid or non-classical secretory pathway were predicted to be present
No Transmembrane helix, signal peptid or non-classical secretory pathway were not predicted