Table 2. Pathways enriched in cluster A and cluster B.
| Pathways | ES | NES | NOM P value | FDR q value |
|---|---|---|---|---|
| Pathway enriched in cluster B | ||||
| KEGG_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION | 0.71 | 2.56 | 0 | 0 |
| KEGG_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION | 0.7 | 2.45 | 0 | 0 |
| KEGG_JAK_STAT_SIGNALING_PATHWAY | 0.6 | 2.32 | 0 | 0 |
| KEGG_ECM_RECEPTOR_INTERACTION | 0.79 | 2.31 | 0 | 0 |
| KEGG_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY | 0.64 | 2.31 | 0 | 0 |
| KEGG_CHEMOKINE_SIGNALING_PATHWAY | 0.63 | 2.23 | 0 | 0 |
| KEGG_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY | 0.59 | 2.18 | 0.002 | 0.001 |
| KEGG_ANTIGEN_PROCESSING_AND_PRESENTATION | 0.68 | 2.16 | 0.002 | 0.001 |
| KEGG_INTESTINAL_IMMUNE_NETWORK_FOR_IGA_PRODUCTION | 0.86 | 2.15 | 0 | 0.001 |
| KEGG_MAPK_SIGNALING_PATHWAY | 0.44 | 1.8 | 0 | 0.022 |
| Pathway enriched in cluster A | ||||
| KEGG_HOMOLOGOUS_RECOMBINATION | –0.83 | –2.21 | 0 | 0.001 |
| KEGG_OXIDATIVE_PHOSPHORYLATION | –0.7 | –2.14 | 0.002 | 0.004 |
| KEGG_RNA_POLYMERASE | –0.72 | –2.11 | 0 | 0.004 |
| KEGG_MISMATCH_REPAIR | –0.81 | –2.1 | 0.002 | 0.003 |
| KEGG_PYRIMIDINE_METABOLISM | –0.58 | –2.02 | 0 | 0.006 |
| KEGG_BASAL_TRANSCRIPTION_FACTORS | –0.64 | –2.02 | 0.004 | 0.006 |
| KEGG_CELL_CYCLE | –0.57 | –1.86 | 0.027 | 0.022 |
| KEGG_GLUTATHIONE_METABOLISM | –0.54 | –1.76 | 0.022 | 0.039 |
| KEGG_PROTEASOME | –0.67 | –1.89 | 0.014 | 0.019 |
| KEGG_AMINOACYL_TRNA_BIOSYNTHESIS | –0.64 | –1.88 | 0.016 | 0.018 |
ES, Enrichment Score; NES, Normalized Enrichment Score; NOM, Nominal; FDR, false discovery rate.