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[Preprint]. 2022 Nov 3:2022.11.03.515010. [Version 1] doi: 10.1101/2022.11.03.515010

Figure 1.

Figure 1.

Analysis schematic. A) Illumina Platform Variant Calling. B) Oxford Nanopore Technologies (ONT) Variant Calling. For each sequencing technology, the main steps of variant calling are broken out in large boxes: read retrieval, host removal, read trimming, alignment, variant calling, variant filtering, variant normalization. For each step, software used by each group/s pipeline is noted.