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. 2022 Nov 9;12:19079. doi: 10.1038/s41598-022-23780-y

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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(a) Histogram for the genome assembly of IndInt showing evidence of heterozygosity by Purge Haplotigs tool. (b) Block diagram of synteny between IndCh and IndInt assembly showing an inversion block in chromosome 3L of IndInt. (c) Top—Orientation of the physical markers as expected in the standard configuration for An. stephensi. Bottom—BLASTN analysis of the assembled IndInt strain revealing the orientation of the physical markers consistent with the 3Li inversion. (d) Quality of IndInt assembly as compared to that of other Anopheles species and completed gold-standard genomes of human and fly. (e) A sample photograph of polytene chromosomes from the IndInt strain showing the loop from the heterozygous inverted configuration of the 3Li.