Antibodies |
|
ETV1 |
ThermoFisher |
cat# PA589150; RRID:AB_2805388 |
SCN5a |
ThermoFisher |
cat# MA1-27429; RRID:AB_1090515 |
IRX3 |
ThermoFisher |
cat# PA5-111549; RRID:AB_2856959 |
PCP4 |
ThermoFisher |
cat# 14705-1-AP; RRID:AB_2878075 |
Alexa 488 |
ThermoFisher |
cat# A32731; RRID:AB_2633280 |
Alexa 594 |
ThermoFisher |
cat# A-21044; RRID:AB_2535713 |
|
Chemicals, peptides, and recombinant proteins |
|
DMEM/F12 |
SigmaAldrich |
cat# D6434-500ML |
Glutamax |
Gibco |
cat# 35050061 |
FBS |
Gibco |
cat# 10082147 |
2-mercaptoethanol |
Gibco |
cat# 31350010 |
Anti-anti |
Gibco |
cat#15240096 |
mTeSRTM1 basal medium |
StemCell Technologies |
cat# 85850 |
hESC-qualified Matrigel |
Corning |
cat# 354277 |
Accutase |
StemCell Technologies |
cat# 07920 |
Y-27632 |
StemCell Technologies |
cat# 72302 |
STEMdiffTM Cardiomyocyte Dissociation Kit |
StemCell Technologies |
cat# 05025 |
TrueCutTM Cas9 v2 |
Invitrogen |
cat# A36497 |
Lipofectamine™ CRISPRMAX™ Cas9 Transfection Reagent |
Life Technologies |
cat# CMAX00001 |
Blasticidin |
Gibco |
cat# A1113902 |
Rolipram |
SigmaAldrich |
cat# R6520-10MG |
Forskolin |
SigmaAldrich |
cat# F3917-10MG |
CHIR99021 |
SigmaAldrich |
cat# 361571-5MG |
SB431542 |
SigmaAldrich |
cat# 616464-5MG |
Valproic acid |
SigmaAldrich |
cat# P4543-10G |
RG108 |
SigmaAldrich |
cat# R8279-10MG |
Parnate |
SigmaAldrich |
cat# 616431-500MG |
Resveratrol |
SigmaAldrich |
cat# R5010-100MG |
Retinoic Acid |
SigmaAldrich |
cat# R2625-500MG |
Neuregulin |
StemCell Technologies |
cat# 78071.1 |
Epinephrine |
SigmaAldrich |
cat# E4250-5G |
NeurobasalTM
|
Gibco |
cat# 12348017 |
KnockOutTM Serum Replacement |
Gibco |
cat# 10828010 |
B-27TM supplement minus vitamin A |
Gibco |
cat# 12587010 |
N-2 supplement |
Gibco |
cat# 17502048 |
Trypsin-EDTA |
Gibco |
cat# 25200056 |
Fibrinogen |
SigmaAldrich |
cat# F8630 |
Thrombin |
SigmaAldrich |
T4648-10KU |
D-PBS |
Gibco |
cat# 14190144 |
6-aminocaproic acid |
Sigma Aldrich |
cat# A2504 |
SILAC DMEM Flex Media, no glucose, no phenol red |
Gibco |
cat# A2493901 |
L-Glutamine |
Gibco |
cat# 25030081 |
MEM Non Essential Amino Acids |
Gibco |
cat# 11140050 |
Sodium DL Lactate |
SigmaAldrich |
cat# L4263-100ML |
STEMdiffTM Cardiomyocyte Support Medium |
StemCell Technologies |
cat# 05027 |
Papain from Carica papaya
|
SigmaAldrich |
cat# 76216-50MG |
PierceTM 16% Formaldehyde (w/v), methanol free |
ThermoScientific |
cat# 28908 |
Triton X-100 |
Sigma-Aldrich |
cat# X100-100ML |
10% Normal Goat Serum |
ThermoFisher |
cat# 50062Z |
DAPI solution |
ThermoScientific |
cat# 62248 |
DEPC-treated water |
Invitrogen |
cat# AM9906 |
PowerTrackTM SYBR Green Master Mix |
Applied Biosystems |
cat# A46109 |
Di-4-ANEPPS |
Invitrogen |
cat#D1199 |
|
Critical commercial assays |
|
STEMdiffTM Cardiomyocyte Maintenance Kit |
StemCell Technologies |
cat# 05020 |
TrueTagTM DNA Donor System |
Life Technologies |
cat# A42992 |
STEMdiffTM Cardiomyocyte Differentiation Kit |
StemCell Technologies |
cat# 05010 |
Quick-RNA Microprep kit |
Zymo Research |
cat# R1050 |
RNA Clean & Concentrator-5 |
Zymo Research |
cat# R1013 |
High-Capacity cDNA Reverse Transcriptase kit |
Applied Biosystems |
cat# 4368814 |
|
Deposited data |
|
Raw RNA-seq data Day 4 and Day 7 – PURK cocktail |
This paper –Also shared in Figshare |
https://doi.org/10.6084/m9.figshare.21290883 |
|
Experimental models: Cell lines |
|
AC16-Cardiomyocytes |
SigmaAldrich |
cat# SCC109 |
Human iPSCs derived from cardiac fibroblasts |
ATCC |
cat# ATCC-CYS0105 |
|
Oligonucleotides |
|
Homology arms specific to CNTN2
|
Life Technologies |
This paper |
Homology arms specific to ACTB
|
Life Technologies |
This paper |
Custom TrueGuideTM gRNA for CNTN2
|
Life Technologies |
This paper |
Custom TrueGuideTM gRNA for ACTB
|
Life Technologies |
This paper |
GAPDH Human qPCR Primer Pair |
OriGene |
cat# HP205798
|
CX40 Human qPCR Primer Pair |
OriGene |
cat# HP208435
|
CX43 Human qPCR Primer Pair |
OriGene |
cat# HP200150
|
ETV1 Human qPCR Primer Pair |
OriGene |
cat# HP208189
|
CNTN2 Human qPCR Primer Pair |
OriGene |
cat# HP208284
|
HCN2 Human qPCR Primer Pair |
OriGene |
cat# HP205124
|
HCN4 Human qPCR Primer Pair |
OriGene |
cat# HP208604
|
MEF2C Human qPCR Primer Pair |
OriGene |
cat# HP206089
|
ACHE Human qPCR Primer Pair |
OriGene |
cat# HP231855
|
TBX3 Human qPCR Primer Pair |
OriGene |
cat# HP231811
|
TBX5 Human qPCR Primer Pair |
OriGene |
cat# HP200177
|
SCN5a Human qPCR Primer Pair |
OriGene |
cat# HP234325
|
IRX3 Human qPCR Primer Pair |
OriGene |
cat# HP214795
|
GATA6 Human qPCR Primer Pair |
OriGene |
cat# HP208427
|
NKX2-5 Human qPCR Primer Pair |
OriGene |
cat# HP207706
|
PCP2 Human qPCR Primer Pair |
OriGene |
cat# HP218542
|
PCP4 Human qPCR Primer Pair |
OriGene |
cat# HP209183
|
TUBB3 Human qPCR Primer Pair |
OriGene |
cat# HP209096
|
OLIG2 Human qPCR Primer Pair |
Life Technologies |
Watson et al. (2018) |
SKOR2 Human qPCR Primer Pair |
Life Technologies |
Watson et al. (2018) |
LHX5 Human qPCR Primer Pair |
Life Technologies |
Watson et al. (2018) |
|
Recombinant DNA |
|
Custom mCherry-puromycin vector DNA template |
Life Technologies |
This paper |
|
Software and algorithms |
|
MATLAB |
Mathworks |
https://www.mathworks.com/products/matlab.html |
IncuCyte ZOOM |
Sartorius |
https://www.essenbioscience.com/en/resources/incucyte-zoom-resources-support/software-modules-incucyte-zoom/ |
GraphPad Prism |
GraphPad |
https://www.graphpad.com/scientific-software/prism/ |
NIS Elements software v4.13 |
Nikon Instruments |
https://www.microscope.healthcare.nikon.com/products/software/nis-elements/nis-elements-advanced-research |
Fluoview Software |
Olympus |
https://www.olympus-lifescience.com/en/laser-scanning/fv3000/super-resolution-software-module/ |
HeatMapper |
Babicki et al. (2016)https://doi.org/10.1093/nar/gkw419
|
http://www.heatmapper.ca/ |
ElectroMap |
O’Shea et al. (2019a)https://doi.org/10.1038/s41598-018-38263-2
|
|