Figure 7.

IGV visualizations of 10XG reads aligned to an individual with heterozygous 20-kb deletion polymorphism

10XG reads from an individual heterozygous for the deletion polymorphism aligned to alternate contig KI270803.1 using Long Ranger. Without using linked-read information, haplotype information is obscured (top). Clustering and coloring reads by haplotype tag (haplotype 1, yellow; haplotype 2, purple; unphased, grey) reveals the heterozygous deletion polymorphism (bottom). The deletion is visible on the yellow haplotype and can be phased with respect to the small variants outside of the deletion.