Table 2. List of genes from RSV and their percent contribution to the RSV derived transcriptome in MRC-5 cells.

Feature	Gene order on viral genome	6hpi raw count	6hpi percent of total (percent of NS1)	16hpi raw count	16hpi percent of total (percent of NS1)	24hpi raw count	24hpi percent of total (percent of NS1)
Not identified	N/A	563	26.61	8,639	17.26	19,587	19.82
NS1	1	406	19.19	9,078	18.13	18,926	19.16
NS2	2	323	15.26 (80)	5,123	10.23 (56)	10,539	10.67 (56)
N	3	75	3.54 (18)	5,308	10.60 (58)	8,604	8.71 (45)
P	4	201	9.50 (50)	5,537	11.06 (61)	10,111	10.23 (53)
M	5	139	6.57 (34)	4,823	9.63 (53)	8,630	8.73 (45)
SH	6	85	4.02 (21)	2,010	4.01 (22)	4,126	4.18 (22)
G (initiation at 2nd AUG)	7	82	3.88 (20)	1,559	3.11 (17)	3,203	3.24 (17)
F	8	49	2.32 (12)	2,447	4.89 (27)	3,850	3.90 (20)
M2	9	74	3.50 (18)	2,412	4.82 (27)	4,329	4.38 (23)
L	10	0	0	5	0.01 (0)	6	0.01 (0)
Total of all features		2,116		50,064		98,801

This table illustrates the number of mapped reads that contain the indicated RSV genes as the 5′ most gene. At each timepoint the raw number of individual transcripts is indicated alongside the percent contribution of those transcripts at that timepoint. In addition, we have calculated the percent abundance of each transcript relative to NS1 abundance. Note that this table shows transcripts with a poly A tail over 20nt long.