Table 3:
Phosphate Group to Backbone Hydrogen Bond Propensities
Residue | Donor | ff99SB | FB18 | Expt. Trend |
---|---|---|---|---|
S1P | Nself | 0.0180 ± 0.0009 | 0.186 ± 0.002 | — |
Ncap | 0.0095 ± 0.0005 | 0.090 ± 0.003 | — | |
SEP | Nself | 0.0022 ± 0.0001 | 0.318 ± 0.004 | — |
Ncap | 0.0003 ± 0.0001 | 0.338 ± 0.003 | — | |
diff: SEP - S1P | Nself | −0.0158 ± 0.0009 | 0.132 ± 0.005 | ↑↑ |
Ncap | −0.0092 ± 0.0005 | 0.248 ± 0.004 | ↔ | |
T1P | Nself | 0.080 ± 0.002 | 0.028 ± 0.002 | — |
Ncap | 0.252 ± 0.009 | 0.009 ± 0.002 | — | |
TPO | Nself | 0.127 ± 0.002 | 0.59 ± 0.02 | — |
Ncap | 0.146 ± 0.007 | 0.043 ± 0.005 | — | |
diff: TPO - T1P | Nself | 0.047 ± 0.003 | 0.56 ± 0.02 | ↑↑↑ |
Ncap | −0.10 ± 0.01 | 0.034 ± 0.005 | ↑ |
Note: The “Expt. Trend” column represents a qualitative interpretation of chemical shift data given in Lee et al.65