Table 1.
Numbat genome assembly statistics compared to koala, antechinus, Tasmanian devil, tammar wallaby and gray short-tailed opossum genomes, accessioned with the National Centre for Biotechnology Information (NCBI).
| Numbat | Koala | Antechinus | Tasmanian devil | Tammar wallaby | Gray short-tailed opossum | |
|---|---|---|---|---|---|---|
| Reference | This study | [37] | [40] | [39] | [42] | [43] |
| Accession no. | – | GCF_002099425.1 | GCA_016696395.1 | GCF_000189315.1 | GCA_000004035.1 | GCF_000002295.2 |
| Year | 2021 | 2018 | 2020 | 2012 | 2011 | 2007 |
| Sequencing technology | 10× linked-reads | PacBio, Illumina, BioNano and HiC | 10× linked-reads | Illumina | Sanger ABI SOLiD | Whole-genome shotgun (WGS) method |
| Genome size (Gbp) | 3.42 | 3.19 | 3.31 | 3.17 | 3.07 | 3.59 |
| No. scaffolds | 112,299 | – | 30,876 | 35,974 | 277,711 | 5223 |
| No contigs | 219,447 | 1906 | 106,199 | 237,291 | 1,174,000 | 72,674 |
| Scaffold N50 (Mbp) | 0.223 | – | 72.7 | 1.8 | 0.0418 | 59.8 |
| Contig N50 (Mbp) | 0.037 | 11.58 | 0.08 | 0.02 | 0.0026 | 0.108 |
| GC (%) | 36.3 | 39.05 | 36.20 | 36.04 | 38.80 | 38.00 |
| Gaps (%) | 3.52 | 0.1 | 2.75 | 7.66 | 17.53 | 2.74 |