Table 2.
Repeats elements annotated in the numbat genome. (Alu: Alu element; CR: complement receptor; ERV: endogenous retrovirus; LINE1: class 1 long interspersed nuclear elements; LINE2: class 2 long interspersed nuclear elements; LTR: long terminal repeat; MIRs: mammalian-wide interspersed repeats; SINE: short interspersed element.)
| Type of repeat |
Number | Repeat sequence | ||
|---|---|---|---|---|
| Length (bp) | Percent | |||
| SINE | Alu MIRs |
11,577 1,718,103 |
2,119,505 243,123,222 |
0.06% 7.10% |
| LINE | LINE1 LINE2 CR1 |
1,402,806 807,962 270,927 |
733,512,048 176,657,028 61,050,371 |
21.42% 5.16% 1.78% |
| LTR |
ERVL ERV1 ERV2 |
2,082 21,263 16,540 |
762,885 6,393,956 5,447,399 |
0.02% 0.19% 0.16% |
| DNA elements |
hAT-Charlie TcMar-Tigger |
120,449 20,819 |
17,122,026 5,373,403 |
0.50% 0.16% |
| Other |
Unclassified Small RNA Satellites |
1,034,362 641 56,304 |
236,046,652 57,442 14,763,428 |
6.89% 0.00% 0.43% |