Table 3.
Report of RepeatMasker software. This report contains statistics of repetitive elements in the Scomber colias genome assembly.
| Total number of sequences | 2,028 | ||
|---|---|---|---|
| Total length (bp) | 814,072,661 bp | ||
| GC level (%) | 40.09 | ||
| Number of bases masked | 241,071,029 bp (29.62%) | ||
| Type | Number of elements | Length in Genome | Percentage of Genome |
| SINEs | 16,132 | 2,679,916 | 0.33 |
| ALUs | 0 | 0 | 0.00 |
| MIRs | 7,082 | 1,280,739 | 0.16 |
| LINEs | 113,089 | 33,426,533 | 4.11 |
| LINE1 | 8,048 | 4,651,362 | 0.57 |
| LINE2 | 57,670 | 14,551,177 | 1.79 |
| L3/CR1 | 697 | 123,438 | 0.02 |
| LTR elements | 82,410 | 20,969,171 | 2.58 |
| ERVL | 10 | 279 | 0.00 |
| ERVL-MaLRs | 0 | 0 | 0.00 |
| ERV_classI | 22,786 | 4,702,084 | 0.58 |
| ERV_classII 11490 | 576,448 | 0.07 | |
| DNA elements | 623,126 | 94,930,706 | 11.66 |
| hAT-Charlie | 27,952 | 5,526,534 | 0.68 |
| TcMar-Tigger | 169 | 46,619 | 0.01 |
| Unclassified | 278,199 | 70,161,089 | 8.62 |
| Total interspersed repeats | - | 222,167,415 | 27.29 |
| Small RNA | 11,380 | 1,807,250 | 0.22 |
| Satellites | 18,552 | 3,093,792 | 0.38 |
| Simple repeats | 84,014 | 23,465,814 | 2.88 |
| Low complexity | 959 | 200,769 | 0.02 |