Table 2.
Assembly quality statistics.
| Category | TGACv2 | ARS_RCv1.1 | MedTr4 | Description |
|---|---|---|---|---|
| Merqury QV | 21.5304 | 48.9101 | 9.74458 | k-mer-based quality |
| Merqury ErrorRate | 0.007 | 1.29 × 10−5 | 0.106 | k-mer-based error rate |
| Merqury completeness (%) | 61.7428 | 77.7322 | 3.86382 | Percentage of complete assembly based on k-mers |
| Freebayes QV | 20.03 | 41.71 | 12.22 | SNP and INDEL quality value |
| Unmapped reads (%) | 3.65 | 2.37 | 60.92 | Percentage of short-reads unmapped |
| COMPLETE single copy (%) | 87.5 | 87.6 | 92.9 | Percent of complete, single-copy BUSCOs |
| COMPLETE duplicated (%) | 3.2 | 10.4 | 4.8 | Percent of complete, duplicated BUSCOs |
| FRAGMENTED (%) | 4.9 | 1.1 | 0.7 | Percent of fragmented BUSCOs |
| MISSING (%) | 4.4 | 0.9 | 1.6 | Percent of missing BUSCOs |