Table 3.

Structural variant analysis

Category	TGACv2	ARS_RCv1.1	Description
HIGH_SPAN_PE	65,254	2,052	FRC_align identified regions with high numbers of inter-contig paired-end read mappings
Lumpy deletions	20,727	20,945	Number of identified structural variant deletions
Lumpy duplications	6,554	3,823	Number of identified structural variant duplications
Lumpy complex	387,898	60,130	Number of complex (multiple tandem deletions or duplications) structural variants
BAC ends to same scaffold	7,357	15,795	BAC end pairs that were best mapped to the same scaffold
BAC ends to different scaffold	21,228	12,791	BAC end pairs with best alignments to different scaffolds
BAC ends unmapped	484	483	Unmapped BAC end pairs