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. 2022 Oct 28;13:930590. doi: 10.3389/fimmu.2022.930590

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Copyright © 2022 Mendes, de Souza Bragatte, Vianna, de Freitas, Pöhner, Richter, Wade, Salzano and Vieira

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Two different views of a pMHC showing the exact region and size of the cylindrical region used by PIPSA to compare MEPs between different pMHCs. The pMHC is shown in the representation with the alpha chain in light blue color, the beta chain in dark blue color, the epitope in orange with amino acid side chains in stick representation. The cylindrical region used for calculation is shown by a gray semi-transparent surface. The pMHC is shown from the top (A) and from the side (B). The pMHC depicted was modeled with the DockTope (28) tool using a dengue virus epitope as input.