TABLE 1.
Summary of sequencing data quality
| Sample | Raw data | Valid data | Valid data gb (G) | Valid ratio (reads) | Q30% | GC content% |
|---|---|---|---|---|---|---|
| CC_root1 | 53,455,648 | 38,232,894 | 5.73 | 71.52 | 99.03 | 46 |
| CC_root2 | 52,404,378 | 38,309,030 | 5.75 | 73.1 | 99.02 | 45.5 |
| CC_root3 | 51,672,842 | 36,455,566 | 5.47 | 70.55 | 98.99 | 45 |
| OC_root1 | 42,011,570 | 37,025,650 | 5.55 | 88.13 | 97.6 | 45 |
| OC_root2 | 42,381,098 | 37,588,930 | 5.64 | 88.69 | 97.36 | 45 |
| OC_root3 | 41,533,684 | 36,290,882 | 5.44 | 87.38 | 97.36 | 45.5 |
| CHX_root1 | 44,422,470 | 32,902,840 | 4.94 | 74.07 | 97.41 | 51 |
| CHX_root2 | 51,270,376 | 50,002,294 | 7.5 | 97.53 | 97.84 | 51 |
| CHX_root3 | 46,166,432 | 40,680,326 | 6.1 | 88.12 | 98.59 | 52 |
| OHX_root1 | 33,581,294 | 32,733,990 | 4.91 | 97.48 | 98.12 | 51 |
| OHX_root2 | 41,411,214 | 35,239,206 | 5.29 | 85.1 | 98.57 | 51 |
| OHX_root3 | 32,963,354 | 31,991,596 | 4.8 | 97.05 | 98.18 | 52 |