Table 2.
Information on the microsatellite markers used in the study (the microsatellite ID, genome position, annealing temperature, and allele length expressed in base pairs).
| Marker | Chr. | Primer (5′–3′) | Annealing, °C | Size (bp) |
|---|---|---|---|---|
| OarAE 129 | 5 | F: AATCCAGTGTGTGAAAGACTAATCCAG R: GTAGATCAAGATATAGAATATTTTTCAACACC |
62 | 135–161 |
| OarCP49 | 17 | F: CAGACACGGCTTAGCAACTAAACGC R: GTGGGGATGAATATTCCTTCATAAGG |
64 | 80–112 |
| CSRD247 | 14 | F: GGACTTGCCAGAACTCTGCAAT R:CACTGTGGTTTGTATTAGTCAGG |
58 | 220–246 |
| OarFCB20 | 2 | F: GGAAAACCCCCATATATACCTATAC R: AATGTGTTTAAGATTCCATACATGTG |
60 | 87–115 |
| HSC | 20 | F: CTGCCAATGCAGAGACACAAGA R: GTCTGTCTCCTGTCTTGTCATC |
63 | 263–297 |
| ILST05 | 7 | F: GGAAGCAATGAAATCTATAGCC R: TGTTCTGTGAGTTTGTAAGC |
55 | 194–254 |
| ILSTS011 | 9 | F: GCTTGCTACATGGAAAGTGC R: CTAAAATGCAGAGCCCTACC |
55 | 250–300 |
| INRA006 | 1 | F: AGGAATATCTGTATCAACCGCAGTC R: CTGAGCTGGGGTGGGAGCTATAAATA |
64 | 110–132 |
| INRA023 | 3 | F: GAGTAGAGCTACAAGATAAACTTC R: TAACTACAGGGTGTTAGATGAACTC |
58 | 194–216 |
| INRA063 | 14 | F: GACCACAAAGGGATTTGCACAAGC R: AAACCACAGAAATGCTTGGAAG |
56 | 169–201 |
| INRA049 | 1 | F: TGTATTAGTTTGTGTTCTTTGGC R: TTGGCTTCCACAATCACACA |
61 | 134–166 |
| INRA132 | 20 | F: AACATTTCAGCTGATGGTGGC R: TTCTGTTTTGAGTGGTAAGCT G |
62 | 146–180 |
| INRA172 | 22 | F: CCAGGGCAGTAAAATGCATAACTG R: GGCCTTGCTAGCCTCTGCAAAC |
65 | 126–172 |
| MAF065 | 15 | F: AAAGGCCAGAGTATGCAATTAGGAG R: CCACTCCTCCTGAGAATATAACATG |
59 | 116–158 |
| MAF214 | 16 | F: AATGCAGGAGATCTGAGGCAGGGACG R: GGGTGATCTTAGGGAGGTTTTGGAGG |
66 | 189–265 |
| McM042 | 9 | F: GTTCGTACTTCTGGGTACTGGTCTC R: GTCCATGGATTTGCAGAGTCAG |
60 | 81–107 |
| SPS113 | 10 | F: CCTCCACACAGGCTTCTCTGACTT R: CCTAACTTGCTTGAGTTATTGCCC |
60 | 126–152 |
| SPS115 | 15 | F: AAAGTGACACAACAGCTTCTCCAG R: AACGAGTGTCCTAGTTTGGCTGTG |
62 | 246–260 |