*.log.tif	Aligned and Laplacian-of-Gaussian filtered SBS data
*.nuclei.tif	Labeled segmentation mask of nuclei
*.cells.tif	Labeled segmentation mask of cells
*.bases.csv	Table of extracted raw intensity for each base channel for each spot
*.reads.csv	Table of extracted read sequences for each spot
*.cells.csv	Table of called reads for each segmented cell (includes two most common barcode sequences for each cell)
*.phenotype.csv	Table of user-defined phenotype features extracted for each segmented cell
combined.csv	Merged table of barcode calls and phenotype features for every processed tile