Table 5. Binding free energy and energy components calculated by MM/GBSA (kcal/mol).
RELA | IL-6 | VEGFA | MMP9 | |
---|---|---|---|---|
ΔE vdW | −34.79 ± 2.30 | −27.05 ± 1.25 | −30.54 ± 1.02 | −33.50 ± 1.30 |
ΔE elec | −11.59 ± 6.18 | −38.13 ± 1.85 | −11.26 ± 3.36 | −26.58 ± 4.06 |
ΔG GB | 27.40 ± 5.81 | 47.48 ± 2.14 | 28.87 ± 3.42 | 43.96 ± 3.82 |
ΔG SA | −4.09 ± 0.22 | −4.23 ± 0.19 | −4.35 ± 0.15 | −4.92 ± 0.18 |
ΔG bind | −23.06 ± 1.69 | −21.93 ± 1.07 | −17.28 ± 1.37 | −21.04 ± 1.31 |
Notes.
- ΔEvdW
- van der Waals energy
- ΔEelec
- electrostatic energy
- ΔGGB
- electrostatic contribution to the solvation
- ΔGSA
- non-polar contribution to the solvation
- ΔGbind
- binding free energy