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. 2022 Nov 10;10:e14171. doi: 10.7717/peerj.14171

Table 5. Binding free energy and energy components calculated by MM/GBSA (kcal/mol).

RELA IL-6 VEGFA MMP9
ΔE vdW −34.79 ± 2.30 −27.05 ± 1.25 −30.54 ± 1.02 −33.50 ± 1.30
ΔE elec −11.59 ± 6.18 −38.13 ± 1.85 −11.26 ± 3.36 −26.58 ± 4.06
ΔG GB 27.40 ± 5.81 47.48 ± 2.14 28.87 ± 3.42 43.96 ± 3.82
ΔG SA −4.09 ± 0.22 −4.23 ± 0.19 −4.35 ± 0.15 −4.92 ± 0.18
ΔG bind −23.06 ± 1.69 −21.93 ± 1.07 −17.28 ± 1.37 −21.04 ± 1.31

Notes.

ΔEvdW
van der Waals energy
ΔEelec
electrostatic energy
ΔGGB
electrostatic contribution to the solvation
ΔGSA
non-polar contribution to the solvation
ΔGbind
binding free energy